PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24343.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 236aa    MW: 26822.4 Da    PI: 9.5623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24343.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.7e-0791110120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++Cp C+k+F+r  nL+ H+
  KHN24343.1  91 FSCPVCHKTFNRYNNLQMHM 110
                 89*****************9 PP
2zf-C2H212.10.0006175197123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C +Cgk+   k + ++H +++
  KHN24343.1 175 FTCRKCGKPLAVKGDWRTHEKNC 197
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.28E-686113No hitNo description
PROSITE profilePS5015710.51291118IPR007087Zinc finger, C2H2
SMARTSM003550.04491113IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-691110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SuperFamilySSF576675.79E-5160195No hitNo description
SMARTSM00355160175195IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MNQNQLQPLP LLSSFLGSSP EESLLQNQNE NPNACHAQVE DVTVALHIGL PDHSSGSNST  60
NNHGFVNATT QVPNNYWIPT QEQILIGFSH FSCPVCHKTF NRYNNLQMHM WGHGSQYRRG  120
PDSLKRTHPR PLLDLPCYCC ARGCKNNIEH ARAKPLKDFR TLQTHYKRKH GSKPFTCRKC  180
GKPLAVKGDW RTHEKNCGKR WLCICGSDFK HKRSLKDHIK AFGFGHTPFS SFSDGM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121126DSLKRT
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN24343.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118080.0AJ311808.1 Glycine max partial mRNA for WIP1 protein (WIP1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544798.11e-179protein TRANSPARENT TESTA 1
RefseqXP_028200147.11e-179protein TRANSPARENT TESTA 1-like
SwissprotQ8VWG36e-98TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A445H7T81e-177A0A445H7T8_GLYSO; Protein TRANSPARENT TESTA 1
TrEMBLI1MAV01e-177I1MAV0_SOYBN; Uncharacterized protein
STRINGGLYMA14G35140.11e-178(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-95C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]