PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24347.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 206aa    MW: 23992.9 Da    PI: 7.5016
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24347.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.6e-161764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l ++++ +G g W++ a+  g++R +k+c++rw++yl
       KHN24347.1 17 KGPWTMEEDLILMNYIANHGEGVWNSLAKAAGLKRNGKSCRLRWLNYL 64
                     79********************************************97 PP
2Myb_DNA-binding55.71.2e-1770113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
       KHN24347.1  70 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 113
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-231067IPR009057Homeodomain-like
PROSITE profilePS5129416.3031264IPR017930Myb domain
SuperFamilySSF466894.12E-3014111IPR009057Homeodomain-like
SMARTSM007171.0E-101666IPR001005SANT/Myb domain
PfamPF002491.4E-141764IPR001005SANT/Myb domain
CDDcd001673.16E-81964No hitNo description
PROSITE profilePS5129425.85965119IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-2568119IPR009057Homeodomain-like
SMARTSM007171.8E-1569117IPR001005SANT/Myb domain
PfamPF002491.6E-1670113IPR001005SANT/Myb domain
CDDcd001673.14E-1274113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDKKQQCKTS QDPEVRKGPW TMEEDLILMN YIANHGEGVW NSLAKAAGLK RNGKSCRLRW  60
LNYLRPDVRR GNITPEEQLL IMELHAKWGN RWSKIAKHLP GRTDNEIKNY WRTRIQKHIK  120
QAENFQQQSS NNSEINDHQA STSHVSTMAE PMEMYSPPCY QGMLEPFSTQ FPTINPDQSS  180
CCTNDNNNIN YWSMEDSWSM QLLNGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-261211922128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN24347.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0901840.0BT090184.1 Soybean clone JCVI-FLGm-3H24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235879.11e-155MYB transcription factor MYB182
RefseqXP_028217886.11e-155myb-related protein 305-like
SwissprotP813915e-91MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A0B2QXH81e-154A0A0B2QXH8_GLYSO; Myb-related protein 305
TrEMBLQ0PJJ41e-154Q0PJJ4_SOYBN; MYB transcription factor MYB182
STRINGGLYMA19G14270.11e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.18e-88myb domain protein 24
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]