PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24556.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 242aa    MW: 27786.8 Da    PI: 6.034
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24556.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.82.1e-2382141359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 Dg++WrKYGqKe+ +++++r+YYrCt++   +C++ k+v+r +edp + ++tY g+H+++
  KHN24556.1  82 DGHQWRKYGQKEILNAKYSRNYYRCTHKydqNCQAIKQVQRIQEDPPLYKTTYLGHHTCN 141
                 9**************************9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-2465141IPR003657WRKY domain
SuperFamilySSF1182902.62E-2378141IPR003657WRKY domain
SMARTSM007744.1E-3380142IPR003657WRKY domain
PROSITE profilePS5081117.8982138IPR003657WRKY domain
PfamPF031062.0E-2382140IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MINGKDNDSP FVRSLAKNVL RSFTNTLFLL DKYPSYEVSP STKSEDSQES CKSFNSKNKR  60
GCYKRKRNTQ EREEVSQTPK LDGHQWRKYG QKEILNAKYS RNYYRCTHKY DQNCQAIKQV  120
QRIQEDPPLY KTTYLGHHTC NDFLNSAIIL DSNNDPSDTS ILLSFNNTFP TPTKQECPFL  180
SSFPSPSSGK KEEVIPSSSP PETSLDDSSR HNNVTLPPPD FWDVMFDSVD LDDVNLLLDC  240
DD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-21821401068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN24556.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0956450.0BT095645.1 Soybean clone JCVI-FLGm-15G11 unknown mRNA.
GenBankKT0312290.0KT031229.1 Glycine max clone HN_CCL_115 WRKY transcription factor (Glyma03g00460.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006599732.11e-180probable WRKY transcription factor 70
RefseqXP_028207084.11e-180probable WRKY transcription factor 70
TrEMBLA0A445GLR41e-178A0A445GLR4_GLYSO; Putative WRKY transcription factor 70
TrEMBLK7MJ241e-178K7MJ24_SOYBN; Uncharacterized protein
STRINGGLYMA16G34590.21e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-33WRKY DNA-binding protein 70