PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24619.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 226aa    MW: 25292.9 Da    PI: 7.6806
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24619.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.1e-1988142256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ ++tkeq  +Le+ F+ ++ ++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  KHN24619.1  88 RKKLKLTKEQSATLEDIFKLHSSLNPAQKQALAEQLNLKHRQVEVWFQNRRARTK 142
                 788899***********************************************98 PP
2HD-ZIP_I/II115.92.4e-3788177190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk++l+keq+++LE+ F+ ++ L+p +K++la++L+l+ rqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eLr++
   KHN24619.1  88 RKKLKLTKEQSATLEDIFKLHSSLNPAQKQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQ 177
                  69*************************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-1873138IPR009057Homeodomain-like
SuperFamilySSF466891.45E-1875145IPR009057Homeodomain-like
PROSITE profilePS5007116.94184144IPR001356Homeobox domain
SMARTSM003892.7E-1586148IPR001356Homeobox domain
PfamPF000463.0E-1688142IPR001356Homeobox domain
CDDcd000862.07E-1588145No hitNo description
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
SMARTSM003401.9E-20144187IPR003106Leucine zipper, homeobox-associated
PfamPF021832.8E-9144178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEDDEACIAS LSLGLGIMGG HAPKKENKQK VPCLDLSFEL CPKGEEEEEE AIDVDQQQHG  60
NKAKGLLCLK HPNDETSPDS NNSNNGSRKK LKLTKEQSAT LEDIFKLHSS LNPAQKQALA  120
EQLNLKHRQV EVWFQNRRAR TKLKQTEVDC EFLKKCCEKL TDENLRLKKE LQELRAQKIG  180
STPLYIQLSK ATTLTICSSC EKLLKPNEGN KGAINKLQNS IELGGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136144RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN24619.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311720.0KT031172.1 Glycine max clone HN_CCL_117 homeodomain/HOMEOBOX transcription factor (Glyma15g18320.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028203289.11e-162homeobox-leucine zipper protein HOX17-like
SwissprotP466048e-53HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0B2QX491e-162A0A0B2QX49_GLYSO; Homeobox-leucine zipper protein HAT14
STRINGGLYMA15G18320.11e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-55HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]