PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24637.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 225aa    MW: 25353.7 Da    PI: 4.4325
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24637.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000286486123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ykC+ C k+F++   L  H  +H
  KHN24637.1 64 YKCETCEKVFRSYQALGGHRASH 86
                9***********99999998887 PP
2zf-C2H211.40.00099125147123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp C ++F +   L  H rtH
  KHN24637.1 125 HECPVCFRVFASGQALGGHKRTH 147
                 79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-116388IPR007087Zinc finger, C2H2
SuperFamilySSF576671.13E-56394No hitNo description
PROSITE profilePS5015710.2016491IPR007087Zinc finger, C2H2
SMARTSM003550.0296486IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SuperFamilySSF576672.61E-5121148No hitNo description
PfamPF139128.7E-11125147IPR007087Zinc finger, C2H2
SMARTSM003550.22125147IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286125147IPR007087Zinc finger, C2H2
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MLSRDKWKEN NKLLYDNKVE IAEYNDDYDD EEDEDEEEEE DEEIYESEEE LKSVKKSNKV  60
RGRYKCETCE KVFRSYQALG GHRASHKKIK LNNCENKNKN NNNNNDDEAE QLEVQHVVVV  120
EKKIHECPVC FRVFASGQAL GGHKRTHVIG SSTAAATTTA TAITTVSVRN SVATVSVRTT  180
STARVVGDSL IDLNLPAPMD DDEEEEGNVS QFEDSAVSDA EFVKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN24637.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0965800.0BT096580.1 Soybean clone JCVI-FLGm-20J22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239999.11e-163zinc finger protein ZAT9-like
RefseqXP_028224271.11e-163zinc finger protein ZAT9-like
TrEMBLA0A0B2QYA91e-163A0A0B2QYA9_GLYSO; Zinc finger protein ZAT4
TrEMBLA0A445L7331e-162A0A445L733_GLYSO; Zinc finger protein ZAT9
TrEMBLC6TG361e-162C6TG36_SOYBN; Uncharacterized protein
STRINGGLYMA03G03950.21e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-23C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]