PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24768.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Dof
Protein Properties Length: 286aa    MW: 30922.2 Da    PI: 9.7049
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24768.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.91.1e-383595262
      zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                +++ +kcprCds ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+++
  KHN24768.1 35 PQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAK 95
                67899***************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027014.5E-333793IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8353993IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-244093IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEQGVEEGGG MNKIPRDSRV KEIRQGDAQI QVQAPQQPQK CPRCDSLNTK FCYYNNYSLS  60
QPRYFCKTCR RYWTQGGTLR NVPVGGGCRK GKRAKSSNSS SSENMNSSSR SLPQQQQQPQ  120
GVVVQTQAPP LTTVVKAKDP SSVVASTFYQ SGGDTLRSSN LGLLSGFNVQ RPIGPIHPPH  180
LYHQMGSGER EMVSLYEQGL VNPSSSSMAN TDTNSSGVSQ HDWPMSFINN NNNNASNRAS  240
DASLWSTIST TVGGNAERTS PSGVGAGSSS FVKNQWPNLP GYGPPP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN24768.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352680.0AC235268.1 Glycine max strain Williams 82 clone GM_WBb0044I02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597450.11e-176dof zinc finger protein DOF1.6
RefseqXP_028202866.11e-176dof zinc finger protein DOF1.6-like
TrEMBLA0A0B2QYB90.0A0A0B2QYB9_GLYSO; Dof zinc finger protein DOF5.3
STRINGGLYMA15G08230.11e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41453258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.11e-32TARGET OF MONOPTEROS 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]