PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24804.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 120aa    MW: 13562.5 Da    PI: 5.2656
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24804.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.11.8e-1076114240
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40 
                 fY+eYA+++GF +r+ + ++s+r+g+i  r++ C+keg+
  KHN24804.1  76 FYDEYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGY 114
                 9************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-876114IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MAELWKAKIL PYKQAIAAYG TAIVGLPSQI AYVDPNEGCR VLESSSWGEL GICEDHAIQE  60
PYEGMEFESE DAAKLFYDEY ARRLGFVMRV MSCRRSERDG RILARRLGCN KEGYCVSIRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN24804.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150403e-93AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014630091.12e-60protein FAR1-RELATED SEQUENCE 2 isoform X1
RefseqXP_014630092.12e-60protein FAR1-RELATED SEQUENCE 2 isoform X1
RefseqXP_014630093.12e-60protein FAR1-RELATED SEQUENCE 2 isoform X1
RefseqXP_028228554.12e-60protein FAR1-RELATED SEQUENCE 2-like isoform X2
TrEMBLA0A0B2QXS26e-83A0A0B2QXS2_GLYSO; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A445KYQ61e-82A0A445KYQ6_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform B
STRINGGLYMA04G12273.19e-60(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.13e-35FAR1 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]