PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN25094.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 416aa MW: 46381.1 Da PI: 7.1507

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN25094.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100	1.6e-31	239	292	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rF++ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ KHN25094.1 239 PRMRWTSSLHNRFLHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 292 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.04E-15	236	293	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-28	237	293	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-24	239	292	IPR006447	Myb domain, plants
Pfam	PF00249	3.4E-7	240	291	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MPQNKIFQDQ QQSSNPIPDL SLHISLPNSA PSSICSEGDS PFDAEGLKSH SDGSIKGSSS 60 PYYHIDTQLS LANHTSTIST PSEAESTWRK RNFVRLCHGV SHEGQIRLIN GIPLYSNLSS 120 LDNTSSTINI PSIERNQLPT NKFSFSSLYA LPHPPSAPNY GNNNGVVFGG VAVEPISRFR 180 EMTMESALRP QQVPYFDYPH QQQHQFGSSN IGASDFSNGF VRSRMFSRQQ SNKRNMRAPR 240 MRWTSSLHNR FLHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKNTDKPA 300 ASSDGDEDFM SLTVPNDQNK NFLPNQRGTP NASIDNDMGY TSSNLWVNSS SSRGARIQAN 360 SRDLDELSPQ EILSSQHTGK LSEGSNYIQT RSFDMDQNPS LEFTLGRSNW HNNEHA

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MPQNKIFQDQ QQSSNPIPDL SLHISLPNSA PSSICSEGDS PFDAEGLKSH SDGSIKGSSS  60
PYYHIDTQLS LANHTSTIST PSEAESTWRK RNFVRLCHGV SHEGQIRLIN GIPLYSNLSS  120
LDNTSSTINI PSIERNQLPT NKFSFSSLYA LPHPPSAPNY GNNNGVVFGG VAVEPISRFR  180
EMTMESALRP QQVPYFDYPH QQQHQFGSSN IGASDFSNGF VRSRMFSRQQ SNKRNMRAPR  240
MRWTSSLHNR FLHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKNTDKPA  300
ASSDGDEDFM SLTVPNDQNK NFLPNQRGTP NASIDNDMGY TSSNLWVNSS SSRGARIQAN  360
SRDLDELSPQ EILSSQHTGK LSEGSNYIQT RSFDMDQNPS LEFTLGRSNW HNNEHA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-17	240	294	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-17	240	294	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-17	240	294	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	240	294	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	240	294	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	240	294	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-17	240	294	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-17	240	294	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-17	240	294	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-17	240	294	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-17	240	294	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-17	240	294	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN25094.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003530084.1	0.0	transcription repressor KAN1 isoform X1
Refseq	XP_028239985.1	0.0	transcription repressor KAN1-like isoform X1
TrEMBL	A0A0B2QYK3	0.0	A0A0B2QYK3_GLYSO; Transcription repressor KAN1
TrEMBL	I1KJ97	0.0	I1KJ97_SOYBN; Uncharacterized protein
STRING	GLYMA07G12070.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1756	33	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	1e-44	G2-like family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]