PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25127.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 230aa    MW: 25435.7 Da    PI: 9.4768
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25127.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-0585107123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C+k F+++  L  H++ H
  KHN25127.1  85 FSCKFCDKKFPSSQALGGHQNAH 107
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.9E-578111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.14E-682112No hitNo description
PROSITE profilePS5015711.19885112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSDELFVGGV ESRKLKRKIE EASSTDVVDS EFVLSLGLGN NKMTGESSSN FLCKSLKGHK  60
ESPCFASKLV ENTNNQVIRP KQRQFSCKFC DKKFPSSQAL GGHQNAHKRE RVLSRINKDM  120
GTFGLGAHMC SYSSIPHQYP FRGPTSLYYG ANMHPMAHMS VMSWPHFVPG SSNQGLHNTS  180
ISGQRFGMTN PWGISAETPP NVYHRDVVFG AEHNQVPSLD VAHRATNGSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25127.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590019.11e-174zinc finger protein 8
RefseqXP_028184720.11e-174zinc finger protein 8-like
TrEMBLA0A0B2QZP11e-172A0A0B2QZP1_GLYSO; Zinc finger protein 4
TrEMBLK7LIM71e-172K7LIM7_SOYBN; Uncharacterized protein
STRINGGLYMA10G19490.21e-173(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142291217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.17e-14C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]