PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN25302.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 157aa MW: 17771.3 Da PI: 7.8262

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN25302.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42	3.1e-13	60	142	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+++GF ++++skk r+g+ ++Cs+eg+ + + k t ++ + +C+a+++v+ + dg w+++k +l+ +Hel+p KHN25302.1 60 SFYRQYASRMGFGFKVRSSKKG-RDGKLHYFMLTCSREGTCVPITLK------TLPTINNNCEANITVSFK-DGLWYIMKAVLDRSHELSP 142 5*************999887.8888**********998777......999999*******9.**************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-10	60	142	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MKDRNNHDEC WESNSVDNGA ESMEEVHELD VIMHDNTNGG FEPCEPASGM SFPSKEAVKS 60 FYRQYASRMG FGFKVRSSKK GRDGKLHYFM LTCSREGTCV PITLKTLPTI NNNCEANITV 120 SFKDGLWYIM KAVLDRSHEL SPTKAMMVRV KKTLACM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN25302.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006590934.1	6e-95	protein FAR-RED IMPAIRED RESPONSE 1
Refseq	XP_028188458.1	6e-95	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445I0S5	1e-93	A0A445I0S5_GLYSO; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	K7LPF2	1e-93	K7LPF2_SOYBN; Uncharacterized protein
STRING	GLYMA11G13523.1	2e-94	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-14	FAR1 family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]