PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN25315.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 1000aa MW: 111119 Da PI: 6.4485

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN25315.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.1	4.1e-29	629	679	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ KHN25315.1 629 EKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 679 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.234	611	699	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-26	631	679	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.9E-21	897	984	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.4E-22	897	979	No hit	No description
PROSITE profile	PS51745	21.363	900	982	IPR000270	PB1 domain
SMART	SM00666	2.1E-21	900	982	IPR000270	PB1 domain
CDD	cd06407	1.62E-29	901	981	No hit	No description
Pfam	PF00564	4.2E-16	903	981	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1000 aa Download sequence Send to blast
MEDHVSPEGK EVSCCAPPGA QLEESTSVDG GKKNSSSEDM FSNFSELMNF DTYAGWSNSP 60 SMTDLSVANV FSLFSSAPYP PPDGLNLVEQ SNGSFFMTED SEFHNGMESS PSCVERVIFQ 120 QMDIHLGFLD EANDSNNLDS KEKLNGKSQQ VNTSDMCNYI ISRSPGRSLD DRMLRALSFF 180 MESADEGMLA QVWVPTKHGD EFILSTSQQP YLLDPKLAGY REVSRAFTFS AEGKTRTCPG 240 LPARVFISHV PEWTSNVGYY NKTEYLRLEH AKNHEIRGSI ALPISDVHSQ VPCAVLELVT 300 TKEKANFDRE LEIFSHALQR LGYLSTKVIM EKFLPCTNDK CLYDDFKQLV NLRTSMPPRL 360 LPQCLSSNKR VALTEIIDVL RAMCHAHRLP LALTWIPCCY SEGIRDETER IRIKEGHTSS 420 NEKCVLCIEE SACYVNDGGV GGFVHACIEH HLEEGQGIAG KALQSNHPFF YTDVKTYDIG 480 EYPLVHHARK YNLNAAVAIR LRSTYTNGDD YILEFFLPVN MTGSSEQQLL LDNLSGTMRR 540 ICKSLRTVSD AELTGIDGSQ GGFPKEKVSG FFPMSRRNSE IAFINGDHDS VQKMSMKTSN 600 MRNNGTEAVH SQAMNGSRKQ VEKKRSTVEK NVSLSVLQQY FSGSLKDAAK SIGVCPTTLK 660 RICRQHGISR WPSRKINKVN RSLKKIQTVL DSVQGVEGGL KFDPYTGGFI AGGSIMQEID 720 AHKYLVFPKK SSVKDPKPAT QKTVSVAPAP GSTRENSTIK LNDDESVCLV RNKFVHSRNV 780 LNSNSSKGEL KKDNVSSDDC CDDSKSMAMN DGSCQKSCLW TKTQDCPEQT CSISLVTDEV 840 EVGVDRVEGA DEHNHPTSSS TTHSSNGSGS MMHGSSSCSQ SFEKQKHSKV KSNCVDSGSK 900 MIVKASYRGD TIRFKFDPSS GCFQLYEEVA TRFKLQNGSF QLKYLDDEEE WVMLVNDSDL 960 QECTEILGDI GTRFVKFLVR DVPCVFRSRG SNSCFLSDSS

Sequence ? help Back to Top

Protein Sequence Length: 1000 aa Download sequence Send to blast

MEDHVSPEGK EVSCCAPPGA QLEESTSVDG GKKNSSSEDM FSNFSELMNF DTYAGWSNSP  60
SMTDLSVANV FSLFSSAPYP PPDGLNLVEQ SNGSFFMTED SEFHNGMESS PSCVERVIFQ  120
QMDIHLGFLD EANDSNNLDS KEKLNGKSQQ VNTSDMCNYI ISRSPGRSLD DRMLRALSFF  180
MESADEGMLA QVWVPTKHGD EFILSTSQQP YLLDPKLAGY REVSRAFTFS AEGKTRTCPG  240
LPARVFISHV PEWTSNVGYY NKTEYLRLEH AKNHEIRGSI ALPISDVHSQ VPCAVLELVT  300
TKEKANFDRE LEIFSHALQR LGYLSTKVIM EKFLPCTNDK CLYDDFKQLV NLRTSMPPRL  360
LPQCLSSNKR VALTEIIDVL RAMCHAHRLP LALTWIPCCY SEGIRDETER IRIKEGHTSS  420
NEKCVLCIEE SACYVNDGGV GGFVHACIEH HLEEGQGIAG KALQSNHPFF YTDVKTYDIG  480
EYPLVHHARK YNLNAAVAIR LRSTYTNGDD YILEFFLPVN MTGSSEQQLL LDNLSGTMRR  540
ICKSLRTVSD AELTGIDGSQ GGFPKEKVSG FFPMSRRNSE IAFINGDHDS VQKMSMKTSN  600
MRNNGTEAVH SQAMNGSRKQ VEKKRSTVEK NVSLSVLQQY FSGSLKDAAK SIGVCPTTLK  660
RICRQHGISR WPSRKINKVN RSLKKIQTVL DSVQGVEGGL KFDPYTGGFI AGGSIMQEID  720
AHKYLVFPKK SSVKDPKPAT QKTVSVAPAP GSTRENSTIK LNDDESVCLV RNKFVHSRNV  780
LNSNSSKGEL KKDNVSSDDC CDDSKSMAMN DGSCQKSCLW TKTQDCPEQT CSISLVTDEV  840
EVGVDRVEGA DEHNHPTSSS TTHSSNGSGS MMHGSSSCSQ SFEKQKHSKV KSNCVDSGSK  900
MIVKASYRGD TIRFKFDPSS GCFQLYEEVA TRFKLQNGSF QLKYLDDEEE WVMLVNDSDL  960
QECTEILGDI GTRFVKFLVR DVPCVFRSRG SNSCFLSDSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN25315.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235172	0.0	AC235172.1 Glycine max strain Williams 82 clone GM_WBb0002N17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006592131.1	0.0	protein NLP9
Refseq	XP_014619984.1	0.0	protein NLP9
Refseq	XP_014619985.1	0.0	protein NLP9
Refseq	XP_014619986.1	0.0	protein NLP9
Refseq	XP_025980390.1	0.0	protein NLP9
Refseq	XP_028193553.1	0.0	protein NLP9-like
Refseq	XP_028193554.1	0.0	protein NLP9-like
Refseq	XP_028193555.1	0.0	protein NLP9-like
Refseq	XP_028193556.1	0.0	protein NLP9-like
Refseq	XP_028193557.1	0.0	protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A445HLK6	0.0	A0A445HLK6_GLYSO; Protein NLP8 isoform A
TrEMBL	I1LQB5	0.0	I1LQB5_SOYBN; Uncharacterized protein
STRING	GLYMA12G05390.4	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]