PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25499.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 227aa    MW: 23766.2 Da    PI: 9.481
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25499.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-093055227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                kt++C+ f     Ck+Gd+C+FaHg+
  KHN25499.1 30 KTRICNKFNTAEGCKFGDKCHFAHGE 55
                8***********************96 PP
2zf-CCCH36.21e-11194218126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC +fa+ G C +G+rC+FaHg
  KHN25499.1 194 FKTKLCENFAK-GSCTFGERCHFAHG 218
                 69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-142659IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-82759IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-42855IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.612856IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-63055IPR000571Zinc finger, CCCH-type
SuperFamilySSF547919.79E-1690170IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.3E-1798168IPR004088K Homology domain, type 1
SMARTSM003221.8E-1299169IPR004087K Homology domain
PROSITE profilePS5008415.137100164IPR004088K Homology domain, type 1
CDDcd001051.35E-15102165No hitNo description
PfamPF000132.9E-12102165IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.0E-16189224IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-7193219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.352193220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8193223IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9194218IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MMNLKPAAPP PRTVAAPPPI PNGSAPSAVK TRICNKFNTA EGCKFGDKCH FAHGEWELGK  60
PIAPSIDDHH HHRPLGPPAG GRMAGRIEPP PAMAASFGAN STAKISVEAS LAGAIIGKGG  120
VNSKQICRQT GAKLSIREHE SDPNLRNIEL EGTFEQIKEA SNMVKDLLLT VSMSAPPKST  180
PGVPGAPAPP GSNFKTKLCE NFAKGSCTFG ERCHFAHGAA ELRKSGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25499.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0943100.0BT094310.1 Soybean clone JCVI-FLGm-18B11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028209095.11e-162zinc finger CCCH domain-containing protein 14-like
SwissprotQ69XQ38e-81C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0B2QZP41e-163A0A0B2QZP4_GLYSO; Zinc finger CCCH domain-containing protein 44
STRINGGLYMA02G29360.11e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-66C3H family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]