PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25633.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 385aa    MW: 43802.6 Da    PI: 7.0869
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25633.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.33.5e-118138238374
        GRAS  38 mqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136
                 mqR+a+yf eALa r++++++++ +al++s+ +   +s+e+ ++klf+e+ P+lkfs++++NqaI+ea+ege++vHi+D+    ++QW++Llq L++Rp
  KHN25633.1   1 MQRIASYFSEALADRILKTWPGIHRALNSSRIT--MVSDEILVQKLFFELLPFLKFSYILTNQAIVEAMEGEKMVHIVDLYGAGPAQWISLLQVLSARP 97 
                 8**************************999998..69************************************************************** PP

        GRAS 137 egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll..................... 214
                 egpp+lRiTgv++    +ke l +++++L++ Ae+l++pf+fn+ v ++le+l++++Lrvk+gEala++++lqlh+ll                     
  KHN25633.1  98 EGPPHLRITGVHH----KKEVLDQMAHKLTEEAEKLDIPFQFNP-VLSKLENLDFDKLRVKTGEALAISSILQLHSLLaldedasrrkspflsknsnai 191
                 *************....9**************************.799*************************************************** PP

        GRAS 215 ................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                                                 ++s +l +  +++L+++++lsPkv+vv+eq+ +hn  + +er++eal  y+a fd+le++++r+s +
  KHN25633.1 192 hlqkgllmnhntlgdlldgyspspdsassspaASSSALMN-SESFLNALWGLSPKVMVVTEQDFNHNCLTMMERLAEALFSYAAYFDCLESTVSRASMD 289
                 ***************************9999744444443.69******************************************************** PP

        GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 r k+E++l+g+ei+n++aceg er+erhe++ +W +rl+ +GF +vp+s++ + q ++ l++++ +gy++ ee g ++++W++r+L+s++aWr
  KHN25633.1 290 RLKLEKMLFGEEIKNIIACEGCERKERHEKMDRWIQRLDLSGFANVPISYYGMLQGRRFLQTYGCEGYKMREECGRVMICWQERSLFSITAWR 382
                 ********************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.3431362IPR005202Transcription factor GRAS
PfamPF035141.2E-1151382IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MQRIASYFSE ALADRILKTW PGIHRALNSS RITMVSDEIL VQKLFFELLP FLKFSYILTN  60
QAIVEAMEGE KMVHIVDLYG AGPAQWISLL QVLSARPEGP PHLRITGVHH KKEVLDQMAH  120
KLTEEAEKLD IPFQFNPVLS KLENLDFDKL RVKTGEALAI SSILQLHSLL ALDEDASRRK  180
SPFLSKNSNA IHLQKGLLMN HNTLGDLLDG YSPSPDSASS SPAASSSALM NSESFLNALW  240
GLSPKVMVVT EQDFNHNCLT MMERLAEALF SYAAYFDCLE STVSRASMDR LKLEKMLFGE  300
EIKNIIACEG CERKERHEKM DRWIQRLDLS GFANVPISYY GMLQGRRFLQ TYGCEGYKMR  360
EECGRVMICW QERSLFSITA WRPRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-36238241375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25633.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517515.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-178SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A445M7430.0A0A445M743_GLYSO; Scarecrow-like protein 3
STRINGGLYMA01G43620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-167scarecrow-like 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]