PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25675.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 245aa    MW: 27881.4 Da    PI: 7.2755
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25675.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.81.1e-28120176257
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 
                 +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers+ dp v+++tY+ eH 
  KHN25675.1 120 SDPWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKHVERSHLDPGVFIVTYTAEHS 176
                 799************************998**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-27106180IPR003657WRKY domain
PROSITE profilePS5081131.491114180IPR003657WRKY domain
SuperFamilySSF1182909.02E-25115180IPR003657WRKY domain
SMARTSM007745.3E-33119179IPR003657WRKY domain
PfamPF031061.4E-23121176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDWDLQAIVG CTKAPAATVM DNPHLIFSQH FCPEEQDDLL CNFQEFSETT TVVDELEELY  60
KPSYPRHVHD NPLPVVANSP PILDEKVKEL KPSDKTASRC KKSKKRQKNK RVVTAADGVS  120
DPWAWRKYGQ KPIKGSPYPR SYYRCSSSKG CLARKHVERS HLDPGVFIVT YTAEHSDPHP  180
TCKNSQQRKN SSTIPLPTTR TRDDQHTLIP VVAEAIEDEH EEIKELKKEE DFVEGVGFQA  240
SKLRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-17114175969WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25675.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028224236.10.0WRKY transcription factor 22-like
TrEMBLA0A445M7B80.0A0A445M7B8_GLYSO; WRKY transcription factor 22
STRINGGLYMA01G43130.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.15e-23WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]