PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25738.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 281aa    MW: 32179.4 Da    PI: 6.9309
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25738.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.3e-082302632154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp+++++++L +++gL+ +q+ +WF N+R +
  KHN25738.1 230 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 263
                 469*****************************87 PP
2ELK25.62.9e-09184205122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK +L++++++++ ++++E++
  KHN25738.1 184 ELKIELKQGFKSRIEDVREEIL 205
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.1E-191862IPR005540KNOX1
PfamPF037902.7E-172061IPR005540KNOX1
SMARTSM012562.9E-2373128IPR005541KNOX2
PfamPF037915.3E-1776127IPR005541KNOX2
PROSITE profilePS512139.132184204IPR005539ELK domain
PROSITE profilePS5007111.71204267IPR001356Homeobox domain
SuperFamilySSF466892.87E-16206271IPR009057Homeodomain-like
SMARTSM003895.3E-11206271IPR001356Homeobox domain
CDDcd000867.31E-12207268No hitNo description
Gene3DG3DSA:1.10.10.603.7E-25211269IPR009057Homeodomain-like
PfamPF059209.9E-18224263IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MQEPSLGLMG EVSGDHHRQL KAEITTHPLY EQLLAAHVAC LRVATPIDQL PLIDAQLSQS  60
HHLLRSYVSH NTHSLSPHHR QELDNFLAQY LIVLCTFKEQ LQQHVRVHAV EAVMACRDIE  120
NALQALTGVS LGEGTGATMS DDEDDLQMDF SLDQSSAEGH DMMGFGPLLP TESERSLMER  180
VRQELKIELK QGFKSRIEDV REEILRKRRA GKLPGDTTSV LKNWWQQHAK WPYPTEDDKA  240
KLVEETGLQL KQINNWFINQ RKRNWHSNSQ SVTSLKSKRK R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12207263864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260280RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25738.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0950030.0BT095003.1 Soybean clone JCVI-FLGm-6F23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028246946.10.0homeobox protein HD1-like
SwissprotQ9FPQ81e-169KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A445M6C80.0A0A445M6C8_GLYSO; Homeobox protein knotted-1-like 7 isoform A
STRINGGLYMA01G42410.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63483450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-171KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  5. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]