PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25966.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family BBR-BPC
Protein Properties Length: 279aa    MW: 30925.5 Da    PI: 10.0082
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25966.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind318.62e-9712791301
   GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalll 86 
                 mddd  +  n+gyyep      +lglqlm  i+erd+k+    r+  + l++ ++++++rd          ++  rd++++         +++++++++
  KHN25966.1   1 MDDDVLNMPNWGYYEPF--RGGHLGLQLMPGITERDTKPflpgRDPAM-LIGANGTFHPRDcavseapmpLNY-VRDNWINP--------RDRFFNMQQ 87 
                 899988779******98..4579******************9888888.9***********777777766666.66777776........567888888 PP

   GAGA_bind  87 venslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad 184
                  +n       +++ vl++t+ + +lq      ++++     ++ + +e      ++ ++ke  ++kkrq++    ++kakk++k    +k++ +++   
  KHN25966.1  88 PTN-------PSYAVLPETSGAPNLQI-----IQPPDSSsDEKVDRVE------EVAVKKEGGQSKKRQTKGALSTPKAKKPRK----PKDNGNAPV-- 162
                 555.......568999******99998.....3332222112222233......344444445555455444444444444444....334667777.. PP

   GAGA_bind 185 erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpv 283
                 +r+k +kk+++lv+ng+++D+s+lP+PvCsCtGa++qCY+WG+GGWqSaCCtt++S+yPLP+s krrgaRiagrKmSqgafkk+LekLaaeGy+++np+
  KHN25966.1 163 QRAKPPKKTMELVINGIDMDISGLPTPVCSCTGAPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPI 261
                 689************************************************************************************************ PP

   GAGA_bind 284 DLkdhWAkHGtnkfvtir 301
                 DLk+hWA+HGtnkfvtir
  KHN25966.1 262 DLKTHWARHGTNKFVTIR 279
                 *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.3E-1641279IPR010409GAGA-binding transcriptional activator
PfamPF062174.8E-1071279IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDDDVLNMPN WGYYEPFRGG HLGLQLMPGI TERDTKPFLP GRDPAMLIGA NGTFHPRDCA  60
VSEAPMPLNY VRDNWINPRD RFFNMQQPTN PSYAVLPETS GAPNLQIIQP PDSSSDEKVD  120
RVEEVAVKKE GGQSKKRQTK GALSTPKAKK PRKPKDNGNA PVQRAKPPKK TMELVINGID  180
MDISGLPTPV CSCTGAPQQC YRWGCGGWQS ACCTTNVSIY PLPMSMKRRG ARIAGRKMSQ  240
GAFKKVLEKL AAEGYNFANP IDLKTHWARH GTNKFVTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25966.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0962150.0BT096215.1 Soybean clone JCVI-FLGm-15O8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028232547.10.0protein BASIC PENTACYSTEINE2-like
RefseqXP_028232548.10.0protein BASIC PENTACYSTEINE2-like
RefseqXP_028232549.10.0protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD01e-107BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A445KNR80.0A0A445KNR8_GLYSO; Protein BASIC PENTACYSTEINE1 isoform A
STRINGGLYMA05G26790.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.21e-110basic pentacysteine1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]