PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN25983.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 249aa MW: 26769.8 Da PI: 7.3465

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN25983.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H KHN25983.1 94 FSCNYCRRKFYSSQALGGHQNAH 116 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.74E-6	92	122	No hit	No description
PROSITE profile	PS50157	11.385	94	121	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	96	116	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MMTPNLNLEP ENHSEGSSQV ASNVSFHEAS HDLKKGSTTT SSCLTKDETD PGSITLDLTL 60 NFNSGDGELK GSSDASSEVG AEAPASASAT PRVFSCNYCR RKFYSSQALG GHQNAHKRER 120 TMAKRAMRMG MFTERYTSLA SLPLHGSPFR SLGLEAHSAM HRRHVPSSAA ALRAPDMRAA 180 AKFERNQFGS LVFVEDDDVG FFWPGSFRQV DQQGAGVNVG HAQSSNASLI PMVPPPPQAS 240 TSPDLTLKL

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN25983.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098207	0.0	BT098207.1 Soybean clone JCVI-FLGm-23A5 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014631143.1	0.0	zinc finger protein 4
Refseq	XP_014631144.1	0.0	zinc finger protein 4
Refseq	XP_014631145.1	0.0	zinc finger protein 4
Refseq	XP_028232573.1	0.0	zinc finger protein 4-like
Refseq	XP_028232575.1	0.0	zinc finger protein 4-like
Refseq	XP_028232576.1	0.0	zinc finger protein 4-like
Swissprot	Q39263	3e-38	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A0R0JV43	0.0	A0A0R0JV43_SOYBN; Uncharacterized protein
TrEMBL	A0A445KN64	0.0	A0A445KN64_GLYSO; Zinc finger protein 4 isoform A
STRING	GLYMA05G26990.1	1e-176	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	2e-38	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]