PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26005.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 257aa    MW: 28656.6 Da    PI: 4.3727
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26005.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC36.79.1e-121693098
       NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                ++adedv +i+  +P l+ska elf+ +l  +++  +     +t++   ++++v+  ++fdfl div +
  KHN26005.1  1 MQADEDVGKIAMAVPLLVSKALELFLQDLCDQTYEITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSK 69
                899***************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.19E-19171IPR009072Histone-fold
PfamPF008083.6E-11154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.4E-18168IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MQADEDVGKI AMAVPLLVSK ALELFLQDLC DQTYEITLRR GAKTMNAFHL KQCVQTFNVF  60
DFLKDIVSKV PDLGSSVATG DDHAVTKRRK VAGDDDNDSD EELKRNKKPE PGHSSGRGRG  120
RGRGRGIRTV DQEMGSHAKC EDDSHVLKQN DNHQSNESME NASEPAEVKQ SFPVSKPTEV  180
CIRNFDLNLD PDEDMDSLDT PTSVPASSSA KSVSEEKHEE YPGWPLSDME KMTIDPIQLA  240
NINGRIDEDE EDYDEEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-141552175Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116125RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595786.10.0dr1-associated corepressor
RefseqXP_028199944.10.0dr1-associated corepressor-like
TrEMBLA0A0B2QWP90.0A0A0B2QWP9_GLYSO; Dr1-associated corepressor
TrEMBLA0A445H1630.0A0A445H163_GLYSO; Dr1-associated corepressor
TrEMBLK7M4T40.0K7M4T4_SOYBN; Uncharacterized protein
TrEMBLK7M4T50.0K7M4T5_SOYBN; Uncharacterized protein
STRINGGLYMA14G04321.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-51nuclear factor Y, subunit C11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]