PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26009.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 216aa    MW: 24604.6 Da    PI: 8.4992
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26009.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-14754148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +v+  G g+W+ + +  g+ R++k+c++rw ++l
       KHN26009.1  7 KGPWTAEEDAILAAYVTSNGVGNWNIVRKNTGLARCGKSCRLRWTNHL 54
                     79*******************************************996 PP
2Myb_DNA-binding48.52e-1560103146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE+++ +++++++G++ W++ a++++ gRt++++k++w++
       KHN26009.1  60 KGAFTQEEQLKVIQLHALMGNK-WARMAQELP-GRTDNEIKNFWNT 103
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.52254IPR017930Myb domain
SuperFamilySSF466894.12E-286101IPR009057Homeodomain-like
SMARTSM007171.6E-11656IPR001005SANT/Myb domain
PfamPF002491.2E-12754IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-22861IPR009057Homeodomain-like
CDDcd001679.82E-10954No hitNo description
PROSITE profilePS5129423.35655109IPR017930Myb domain
SMARTSM007171.5E-1459107IPR001005SANT/Myb domain
PfamPF002491.6E-1460103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2462108IPR009057Homeodomain-like
CDDcd001674.86E-1162103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
EDSFLKKGPW TAEEDAILAA YVTSNGVGNW NIVRKNTGLA RCGKSCRLRW TNHLRPDLKK  60
GAFTQEEQLK VIQLHALMGN KWARMAQELP GRTDNEIKNF WNTRQKKRKR AGLPLYPEDI  120
EVLNVDNPQS INQNVSTQHA NDSQPGTSSH NVPELVFNNY KLVNGKHPSC VPPISVMPEN  180
STFEQQDNSD KQVMHPPHLQ IMHRSHEQLQ DSLPND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-2751085107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB97 and MYB101, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26009.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in pollen tube 4 hours after pollen germination. {ECO:0000269|PubMed:19714218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028201062.11e-160transcription factor MYB65-like
SwissprotQ94FL79e-60MY120_ARATH; Transcription factor MYB120
TrEMBLA0A0B2R1581e-161A0A0B2R158_GLYSO; Transcription factor GAMYB (Fragment)
TrEMBLA0A445H1A61e-159A0A445H1A6_GLYSO; Transcription factor MYB120
STRINGXP_007141541.12e-74(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.14e-62myb domain protein 120
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]