PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26066.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 277aa    MW: 31524.4 Da    PI: 6.6503
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26066.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.2e-27958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien +nrqvtfskRrng++KKA+ELS+LCd+++avi+fs++g++  +s
  KHN26066.1  9 KRIENPTNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFS 58
                79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.408161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-38160IPR002100Transcription factor, MADS-box
CDDcd002655.35E-36275No hitNo description
SuperFamilySSF554551.09E-28276IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-25323IPR002100Transcription factor, MADS-box
PfamPF003194.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGRVKLEIKR IENPTNRQVT FSKRRNGLIK KAYELSILCD IDIAVIMFSP SGRVNHFSGR  60
RRIEDVFTRY INLPDQVRDN AVSFPELPYR RLYEPDPLKM STMADLENSE KYLVDVLTRV  120
IQRKEYLLSN HLSSYDPSGI QGIPTSFENV GWLQDGNQNH TQIFDASAPL DPLRDLSSTV  180
YGSFSQGTSS NANPRIMGEC HVSNPSDGNL QAWPLGYTLY PHHHIQHDMV GPDMTDMMPN  240
GQVNIPITAS HVEQPKNESV EYDQSKQPPH HHQLNAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A4e-17190191MEF2 CHIMERA
6bz1_B4e-17190191MEF2 CHIMERA
6bz1_C4e-17190191MEF2 CHIMERA
6bz1_D4e-17190191MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26066.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0897451e-124BT089745.1 Soybean clone JCVI-FLGm-14M9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543775.21e-171agamous-like MADS-box protein AGL104
SwissprotQ9LM463e-74AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A0B2QWN60.0A0A0B2QWN6_GLYSO; Agamous-like MADS-box protein AGL15
STRINGGLYMA13G02170.11e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-76AGAMOUS-like 104
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]