PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26092.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 348aa    MW: 39223.6 Da    PI: 7.9696
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26092.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-073478345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT e+ +l+ +a + + ++   +W+++a+++  g+   +++ ++ 
       KHN26092.1 34 KWTSEDKKLFENALAVHDKDtpdQWHKVAKMIL-GKIVVDVIRKYK 78
                     8*******************************9.******999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.8E-73183IPR001005SANT/Myb domain
SuperFamilySSF466897.85E-103381IPR009057Homeodomain-like
CDDcd001675.53E-63480No hitNo description
PfamPF002497.7E-63479IPR001005SANT/Myb domain
SMARTSM0071718167216IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-6177217IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-8177217IPR006447Myb domain, plants
CDDcd001677.38E-4177214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MKWESITLSS PTPCTPNSNT NWLVMEDNNS SSTKWTSEDK KLFENALAVH DKDTPDQWHK  60
VAKMILGKIV VDVIRKYKEL EVDISNIETV LIPVPGYSSI ATSPFTLDWV NTHGYDGFKG  120
YGKRSSSLRP IEHERKKGVP RTEDEHKTGG WSLKLIGVWT RILYLEFELP FNVPCILFLL  180
GLKKYGKGDW TNICCNFVIT RTPTQVGSHA QKYFIRQLSG GKDKSRASIH DKTTVNLTET  240
ITTSSEDTNR STSPHVLSSN NSQILLLLHQ ELVFNGVAFD LNFAPCLVVA LFITLAMTLN  300
PGHERIFMSH YGANSFGVKI EGQNIHESSY LGPQTQNMVF QMQQSSQH
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26092.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519244.11e-176transcription factor DIVARICATA
TrEMBLA0A0B2R2F10.0A0A0B2R2F1_GLYSO; Transcription factor MYB1R1
STRINGGLYMA20G16630.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3676522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.15e-68MYB family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]