PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN26253.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 458aa MW: 50238.6 Da PI: 6.8293

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN26253.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	121	181	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrknk+s KHN26253.1 121 PDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 181 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-28	121	178	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-32	123	179	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.686	125	179	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	127	163	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MQENKDPAIK LFGQKIAFAG EVDPPAISAG EIDSPPAMDV DKDEEDDFGD SETEDEKDKD 60 PRAEKVSEKT KEADPPPNAA DSKKTPEGIQ NPNTPSIDEE SAKSKTNKSE NNNNNKTLKK 120 PDKILPCPRC NSMDTKFCYY NNYNVNQPRY FCKACQRYWT AGGTMRNVPV GAGRRKNKNS 180 ASHYRHITIS EALQAARIDA APNGTHHLLK PNGRVLSFGL ELDPPICDSM ASVLNLTAEK 240 KGTLNNNSRN NNNNNNNNGD DCSSASSITV SNEENGKSTS QESIVVPNSN GFIHHVPCIS 300 TLPWPYPFPS GAPAMCPPGF PMSFYPAAFW NIPWFPSQHS HHSSAPTPRS PNSPTLGKHS 360 RDDDATKQYH LQEEQPPSRQ RNGSVLVPKT LRIDDPSEAA KSSIWATLGI KNECVTGGGM 420 FKGFQSKKEE KDHVVEASPV LRANPAALSR SLNFHENS

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MQENKDPAIK LFGQKIAFAG EVDPPAISAG EIDSPPAMDV DKDEEDDFGD SETEDEKDKD  60
PRAEKVSEKT KEADPPPNAA DSKKTPEGIQ NPNTPSIDEE SAKSKTNKSE NNNNNKTLKK  120
PDKILPCPRC NSMDTKFCYY NNYNVNQPRY FCKACQRYWT AGGTMRNVPV GAGRRKNKNS  180
ASHYRHITIS EALQAARIDA APNGTHHLLK PNGRVLSFGL ELDPPICDSM ASVLNLTAEK  240
KGTLNNNSRN NNNNNNNNGD DCSSASSITV SNEENGKSTS QESIVVPNSN GFIHHVPCIS  300
TLPWPYPFPS GAPAMCPPGF PMSFYPAAFW NIPWFPSQHS HHSSAPTPRS PNSPTLGKHS  360
RDDDATKQYH LQEEQPPSRQ RNGSVLVPKT LRIDDPSEAA KSSIWATLGI KNECVTGGGM  420
FKGFQSKKEE KDHVVEASPV LRANPAALSR SLNFHENS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN26253.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003527086.1	0.0	cyclic dof factor 3
Refseq	XP_028237260.1	0.0	cyclic dof factor 3-like
Swissprot	Q8LFV3	1e-119	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A0B2R2M5	0.0	A0A0B2R2M5_GLYSO; Cyclic dof factor 3
TrEMBL	I1KCU1	0.0	I1KCU1_SOYBN; Uncharacterized protein
STRING	GLYMA06G20950.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-106	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]