PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26408.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 303aa    MW: 33341.5 Da    PI: 6.5754
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26408.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014118140123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C+k Fs++  L  H++ H
  KHN26408.1 118 FSCNFCKKEFSSSQALGGHQNAH 140
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.79E-7115145No hitNo description
Gene3DG3DSA:3.30.160.604.3E-5116144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.759118145IPR007087Zinc finger, C2H2
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MASSHFLEGC PSEGSSISAT SEGISHKPSA EEEKNHDEVT TMKEKDVKSE QDQASNSNSH  60
MVLDFVKLSK DYSIRGSKVE LDFFNPMSLG GSSSSRTNNN EGRDENNNEE KSSEAKTFSC  120
NFCKKEFSSS QALGGHQNAH KQERALAKRR QGIDAGAFGN PHFLYYPYHP THSFYGSYNR  180
ALGVRMESMI HKPSYPSPSL GFRFGQGWSR SQEMLNPSLD RLRMETLHAN SGTRILGSDN  240
TNLRTQDDRG TIGHNIPFLG ESSTNVVTKS NSAPLSNLGG DHPKQEAPSS PDSSDEIDLS  300
LKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26408.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1984470.0AC198447.7 Glycine max cultivar Williams 82 clone gmw2-48a19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006582801.10.0zinc finger protein 3
RefseqXP_028237041.10.0zinc finger protein 3-like
TrEMBLA0A0B2R3010.0A0A0B2R301_GLYSO; Zinc finger protein 3
TrEMBLK7KYF20.0K7KYF2_SOYBN; Uncharacterized protein
STRINGGLYMA06G46860.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-25C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]