PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26726.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 190aa    MW: 21917.4 Da    PI: 4.9335
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26726.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM118.75.6e-3781281128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrF Ptdeelvv++L++k++  +++  ++i+++++y ++Pw+L+ ++ ae ++wy++s+r         +nr+t +gyWk tg +++v+s+ +++
  KHN26726.1   8 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DAIPDLEVYPYDPWELDGRALAEGNQWYYYSRRT--------QNRVTGNGYWKPTGMEEPVVSStSNK 97 
                 79*************************999.89**************977778899******984........58******************986777 PP

         NAM  99 lvglkktLvfykgrapk.gektdWvmheyrl 128
                  vg+kk +vf+ g+ap+ g kt+W+m+eyrl
  KHN26726.1  98 RVGMKKYFVFHVGEAPTaGIKTNWIMQEYRL 128
                 8**********998875378*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-485158IPR003441NAC domain
PROSITE profilePS5100546.2258159IPR003441NAC domain
PfamPF023652.7E-239128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGDNNVNLPP GFRFYPTDEE LVVHFLHRKA SLLPCHPDAI PDLEVYPYDP WELDGRALAE  60
GNQWYYYSRR TQNRVTGNGY WKPTGMEEPV VSSTSNKRVG MKKYFVFHVG EAPTAGIKTN  120
WIMQEYRLSD SASSTRSSKR KPQPKIEYNK WVICRVYERN GDDDNGTELS CLDEVFLSLD  180
DDLDEISLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-40416016169NAC domain-containing protein 19
3swm_B1e-40416016169NAC domain-containing protein 19
3swm_C1e-40416016169NAC domain-containing protein 19
3swm_D1e-40416016169NAC domain-containing protein 19
3swp_A1e-40416016169NAC domain-containing protein 19
3swp_B1e-40416016169NAC domain-containing protein 19
3swp_C1e-40416016169NAC domain-containing protein 19
3swp_D1e-40416016169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26726.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619180.0EU661918.1 Glycine max NAC domain protein (NAC18) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531559.11e-142NAC domain-containing protein 104
RefseqXP_028247202.11e-142NAC domain-containing protein 104-like
SwissprotQ8GWK62e-82NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A445JGF81e-140A0A445JGF8_GLYSO; NAC domain-containing protein 104
TrEMBLI1KUF31e-140I1KUF3_SOYBN; Uncharacterized protein
STRINGGLYMA08G19300.11e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.14e-76xylem NAC domain 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  3. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]