PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26753.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 618aa    MW: 68338 Da    PI: 4.3082
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26753.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013146169123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 ++C +C++sF  k+++ +H+ + H
  KHN26753.1 146 FECRKCNMSFDAKDLYLQHLLSfH 169
                 89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.67146169IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280148169IPR007087Zinc finger, C2H2
PROSITE profilePS501578.642193220IPR007087Zinc finger, C2H2
SMARTSM003550.37193215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MEAEAAPLKL ESLVCIDSTT LSHSELLALS LSSLSTFDLR STHDLGYCVF RSPSGQHFVS  60
CKEVSSYLQS LLDNNGDAQL QIMRTENVVQ EHNVPAENSA GVAQEHQDER QIVAVNSDVS  120
AANEREKEVA LLGIENLADV QIHDLFECRK CNMSFDAKDL YLQHLLSFHQ RTTRRYRLGS  180
SVGDGVIIKD GKFECQFCHK VFLERRRYNG HVGIHVRNYV RKVEDLPGQA NVQGTDDKSP  240
VRGQDVPLRI SKMDALIEIA QNSIMEDSVT EPHSSAKLNR IPASDIAVGY IDQDRNSESP  300
ISEQKMEDSM TGNNVDHDLD EELVEEIDDD NHVINVKMVT FLDNVGLLSV NKQDVNVPET  360
SKVKDDVPLT IEELDQSGMD LDEDSHNCLL PLSEHHIIPE SEKSENSGCA NTKGLFILDE  420
DISNKTELEF GLNGLKDVPV TVSTNVQEMV RPASQENVAH SRVFNSSIST EQSLDCLPAF  480
SSDKGEEQFC SVDHEHDNVK GFQELRFDEI DTAECDFARV QVSPSLPDVP TELTNNTVVE  540
GTCASPVQFE SQEVMLNIGG RNQLTTVCVW CGIEFNHDAV NSEIQPDSVG FMCPACKAKI  600
SGQVNVLLDC GSPNAGCL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26753.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0917200.0BT091720.1 Soybean clone JCVI-FLGm-8L19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028244202.10.0uncharacterized protein LOC114422180
RefseqXP_028244203.10.0uncharacterized protein LOC114422180
TrEMBLA0A445JG630.0A0A445JG63_GLYSO; Methyl-CpG-binding domain-containing protein 8 isoform A
STRINGGLYMA08G19033.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58101719
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]