PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN26882.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 251aa    MW: 28593.2 Da    PI: 8.2903
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN26882.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06115141127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 y   +C+++ +tG C y d+CkF+H++
  KHN26882.1 115 YQPDICKDYKETGCCGYHDSCKFMHDQ 141
                 67789********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.34E-8113145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.474114142IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-4114141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-9115145IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4115141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.109.5E-11177233IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578504.89E-10190233No hitNo description
PfamPF139201.4E-6191233No hitNo description
CDDcd001621.91E-4192233No hitNo description
PROSITE profilePS500899.096192230IPR001841Zinc finger, RING-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGDSDQLSKS AKNQKTEQVF SFFRKPVNKK NIRKQTEFSK DARAIRERAL KQAAGSLKGK  60
SASSEDEKLY KGINNYKDYK AGFRREQAIA SEKAGGSHGP LWASAHIRVS ARFDYQPDIC  120
KDYKETGCCG YHDSCKFMHD QGDYKSGWQM EKEWEEVEKA RKMKLAAGED ADEEEGANLT  180
DEDEDGSLPF ACFICRNPFV DPVVTKCKCY FCEHCALKHH AKNKKCFVCN QPTLGIFNVA  240
HEIRRKMAED K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-5736247124317RING finger protein 113A
5z58_M2e-5736247124317RING finger protein 113A
6ff4_t2e-5736247124317RING finger protein 113A
6ff7_t2e-5736247124317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN26882.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877030.0KM587703.1 Glycine max clone GmC3H6 C3H zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304643.11e-146zinc finger CCCH domain-containing protein 1
RefseqXP_003521790.11e-146zinc finger CCCH domain-containing protein 1 isoform X1
RefseqXP_028224191.11e-146zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-113C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A0B2R4V70.0A0A0B2R4V7_GLYSO; Zinc finger CCCH domain-containing protein 1
STRINGGLYMA08G39400.11e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-109C3H family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]