PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN26894.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

YABBY

Protein Properties

Length: 218aa MW: 24255.2 Da PI: 6.2999

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN26894.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	199.7	1.2e-61	6	163	2	165
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 ++f+ +eq+CyvqC+fC+til+vsvP + l++vvtvrCGhCtsllsvn++kas +lla+ hl+ +++ +++ ++ ++++as + KHN26894.1 6 HLFDLPEQICYVQCGFCTTILMVSVPCSILSTVVTVRCGHCTSLLSVNMKKASfvpfHLLASLTHLE--------PKEGASDDGANKSLNSYNNASIIT 96 7899********************************************99977777777777743........333333333333344444444444 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 +++ +e++ ++++ v +PPekrqr Psaynrfikeei+r+k++nP+++h+eafs+aaknWa fP+ KHN26894.1 97 TNSDCEEENVTQISN--VVHKPPEKRQRTPSAYNRFIKEEIKRLKSENPNMAHKEAFSTAAKNWANFPP 163 443333444444443..478**********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.2E-62	11	164	IPR006780	YABBY protein
SuperFamily	SSF47095	9.69E-10	110	165	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.1E-6	114	165	IPR009071	High mobility group box domain
CDD	cd01390	1.73E-5	122	165	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MSTLNHLFDL PEQICYVQCG FCTTILMVSV PCSILSTVVT VRCGHCTSLL SVNMKKASFV 60 PFHLLASLTH LEPKEGASDD GANKSLNSYN NASIITTNSD CEEENVTQIS NVVHKPPEKR 120 QRTPSAYNRF IKEEIKRLKS ENPNMAHKEA FSTAAKNWAN FPPSQCDGEA DSCNGTEQLG 180 DLDSHEEPRD AIEVHKEGQG FRGRKAPRNS IWERAPFE

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN26894.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025985248.1	1e-164	axial regulator YABBY 4
Refseq	XP_028245109.1	1e-164	axial regulator YABBY 4
Swissprot	Q9LDT3	1e-73	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A0B2R3V0	1e-163	A0A0B2R3V0_GLYSO; Axial regulator YABBY 4
TrEMBL	K7L9I2	1e-163	K7L9I2_SOYBN; Uncharacterized protein
STRING	GLYMA08G39290.2	1e-164	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	6e-76	YABBY family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]