PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27012.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 230aa    MW: 26429.2 Da    PI: 8.633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27012.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.1e-12117160755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   Er+RR++i++++++Lr l+P       +K++ a+iL  Av++Ik+Lq
  KHN27012.1 117 VTERNRRNKIKKGLFTLRYLVPRI-----TKMDRAAILADAVDHIKELQ 160
                 57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.85E-10108164No hitNo description
PROSITE profilePS5088813.649110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15113176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16117176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-10117160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
GVVDWHRTLV KTSAWDYVVV WKYGDDPTRF IEWVGCCCSG SCIDVVKPEE EKAEVCNMAP  60
ICRDDHSPIP KTKMPKYNKT SGKRQRGLTS HCSNDDDDKS KSVKESQKEV YQAKNLVTER  120
NRRNKIKKGL FTLRYLVPRI TKMDRAAILA DAVDHIKELQ MQVRELKDEV RELEEQECEK  180
NTPQLRITKA KKQEGTGSNP PLNQSSSGCT KKMQMEVQVE LHHISKTDHI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120127NRRNKIKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014626062.11e-108transcription factor bHLH90-like
TrEMBLA0A0B2R5751e-171A0A0B2R575_GLYSO; Transcription factor ABORTED MICROSPORES (Fragment)
STRINGGLYMA08G39470.22e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-20bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]