PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27132.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 248aa    MW: 28130.6 Da    PI: 7.4022
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27132.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B383.42.1e-2686176183
                 EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                 f+k+ltpsdv+k++rlv+pkk+a ++           g     +++ +++d+  r W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++ F 
  KHN27132.1  86 FQKELTPSDVGKLNRLVIPKKHAVSYfpyvggsadesG---SVDVEAVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDVIAFF 176
                 99****************************98765422...2467899*******************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-3083181IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2784181IPR015300DNA-binding pseudobarrel domain
CDDcd100175.94E-2585184No hitNo description
PfamPF023621.0E-2386176IPR003340B3 DNA binding domain
SMARTSM010197.1E-1886194IPR003340B3 DNA binding domain
PROSITE profilePS5086311.91486197IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAYDSASIKL RSGECHRNFP WNDQTVQEPQ FQSHYSAETV LNMIRDGTYP SKFATFLKTR  60
QTQKGVAKHI GLKGDDEEQF CCTQLFQKEL TPSDVGKLNR LVIPKKHAVS YFPYVGGSAD  120
ESGSVDVEAV FYDKLMRLWK FRYCYWKSSQ SYVFTRGWNR FVKDKKLKAK DVIAFFTWGK  180
SGGEGETFAL IDVIYNNNAE EDSKGDTKQV LGNQLQLAGS EEGEDEDGNI GKDFNAQKGL  240
RLFGVCIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-288517513100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27132.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028220508.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P52e-74RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0B2R5L80.0A0A0B2R5L8_GLYSO; AP2/ERF and B3 domain-containing transcription factor
TrEMBLA0A445FA590.0A0A445FA59_GLYSO; AP2/ERF and B3 domain-containing transcription factor
STRINGGLYMA20G39140.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.19e-77RAV family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]