PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27134.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 298aa    MW: 31958.9 Da    PI: 7.9868
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27134.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-09102127227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt+lC+ f     Ck+Gd+C+FaHg+
  KHN27134.1 102 KTRLCNKFNTAEGCKFGDKCHFAHGE 127
                 8***********************96 PP
2zf-CCCH36.21e-11265289126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC +fa+ G C +G+rC+FaHg
  KHN27134.1 265 FKTKLCENFAK-GSCTFGERCHFAHG 289
                 69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.5124962IPR000571Zinc finger, CCCH-type
PfamPF146082.44959No hitNo description
Gene3DG3DSA:4.10.1000.101.5E-1498131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-898131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.206101128IPR000571Zinc finger, CCCH-type
SMARTSM003560.0074102127IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6102127IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.55E-15163242IPR004088K Homology domain, type 1
SMARTSM003222.0E-10171241IPR004087K Homology domain
PROSITE profilePS5008413.795172236IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.0E-15172242IPR004088K Homology domain, type 1
PfamPF000139.1E-11174238IPR004088K Homology domain, type 1
CDDcd001052.16E-13176237No hitNo description
Gene3DG3DSA:4.10.1000.107.8E-16261295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-9263294IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-7264290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.868264291IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9265289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MNQQEDQLEH EWWSLRLVVG GSVADWAEVS QTENRETLGR VEKKSTSGCP FGEGCHFLHY  60
VPGGFKAVSQ LINVGSNPVT PQVGRNPVPP SFPDGSSPPV VKTRLCNKFN TAEGCKFGDK  120
CHFAHGEWEL GRPTAPSYED PRVLGQMPSS RVGGRVEPPH PAHGAAASFG ASATAKISIN  180
ASLAGAVIGK NGVNSKQICR VTGAKLSIRD HDTDPNLRNI ELEGSFDQIK QASAMVHEVI  240
LNVSSASGPP MKSFTSQTSA PTSNFKTKLC ENFAKGSCTF GERCHFAHGT DELRKSGM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27134.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0943710.0BT094371.1 Soybean clone JCVI-FLGm-18H5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240135.10.0uncharacterized protein LOC100818781
RefseqXP_028221907.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-101C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0B2R4K10.0A0A0B2R4K1_GLYSO; Zinc finger CCCH domain-containing protein 14
STRINGGLYMA20G39160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-53C3H family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]