PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27333.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 515aa    MW: 58295.1 Da    PI: 4.4533
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27333.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-08445498146
                      TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqk 46 
                      r+ WT+eE++ l+++v ++ ++     W++I +       k+Rt+ ++k++w +
       KHN27333.1 445 RLLWTAEEEKVLKEGVSKFSTEnqniPWRKILEFGCrvfdKTRTPVDLKDKWKN 498
                      677****************************9987799**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.77E-766127IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.4E-572126IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002493.4E-475124IPR001965Zinc finger, PHD-type
CDDcd154891.21E-675123No hitNo description
PROSITE patternPS01359076123IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.7E-10438503IPR009057Homeodomain-like
PROSITE profilePS512949.675440504IPR017930Myb domain
SuperFamilySSF466897.25E-10443501IPR009057Homeodomain-like
SMARTSM007172.2E-5444502IPR001005SANT/Myb domain
PfamPF002491.7E-5447498IPR001005SANT/Myb domain
CDDcd116604.58E-12448500No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MRRKSKGKRR RAAPATTLTS PSLSAIPILS DEHNNNAPTA FDTDCDDDNN ALHHRGSEPE  60
PEPELEPVDI FDKTICIHCD NKREEAEGVL ICGGRGCPVA VHATCLGFEP EFDDSGNFCC  120
PYCWYKRAVD TCRRLREKAM KAKGELSRFF GQSRAGATDY SAAARVDPAV LDSEELMEET  180
ETEEQSEENK DEEGMVEESE KLVEGKETEA EENKEEVEGK VRDSEELVEE MQTETEGQTE  240
ENKDEEGEAR VGADSSAAAR KNPVQDGEEI VVEGMETELE AQSGENKDEE GKVRDSEELV  300
EEMEMEMEME TETGAEVQPE ENKDEGKVQD SEELAEETET ETQGQSEEKK DEEGKVAVMS  360
SSVSETNDSE SVAEAVKKRK DQKKKKVASS RKSLSRQQEH KNKHYKTRGK FANKDEEEVT  420
SFKSISLRQQ PQRMKQSSLT AKRRRLLWTA EEEKVLKEGV SKFSTENQNI PWRKILEFGC  480
RVFDKTRTPV DLKDKWKNII SKKGRITYCS YSFDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441445KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27333.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150398e-48AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028204533.10.0neurofilament medium polypeptide-like
TrEMBLA0A0B2R5V80.0A0A0B2R5V8_GLYSO; Uncharacterized protein
STRINGGLYMA15G37810.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.13e-06telomere repeat binding factor 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]