PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27560.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 416aa    MW: 46589.7 Da    PI: 4.6752
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27560.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.41.8e-29732152128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgy 82 
                 p G++F+P+d el+ e+L++k+   +      +  +e+i++++    i++++P++Lp  +k++ + ++fF+++ ++yatg+rk+r+         ++ +
  KHN27560.1  73 PLGVKFDPSDVELL-EHLAAKCGIGNtkqhlfI--NEFIPTLEgdqgICYTHPENLP-GAKKDGNYVHFFHRTTNAYATGQRKRRKihhqqgltEEHVR 167
                 89************.999999877764444331..334444423344**********.556778999******************86777777444788 PP

         NAM  83 WkatgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                 W++tgk+k++++ +g ++g kk++v y   +++ +k+ k++Wvmh+y+l
  KHN27560.1 168 WHKTGKTKAIIE-DGVHKGFKKIMVIYirsSENGSKPYKSNWVMHQYHL 215
                 ************.999***********544334445559********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-3656234IPR003441NAC domain
PROSITE profilePS5100528.59972234IPR003441NAC domain
PfamPF023651.5E-1173215IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MLIVWSCTLP LHFSFSGSRM SWLIDIGGFA KKVKSTTLSS ADQIKDCGAY RECPNCSYHI  60
DNSDVSTEWP GFPLGVKFDP SDVELLEHLA AKCGIGNTKQ HLFINEFIPT LEGDQGICYT  120
HPENLPGAKK DGNYVHFFHR TTNAYATGQR KRRKIHHQQG LTEEHVRWHK TGKTKAIIED  180
GVHKGFKKIM VIYIRSSENG SKPYKSNWVM HQYHLGTEED EKEAEYVVSK VFYQQQKQTE  240
KNEDNPMAGD PANIISRTSP RTPKPNPPNP PRTGKSVDCD DNIDETVLLS AALDTKTIPE  300
GSLAPQSDIQ DQDNTGDAAW LAGESQAEEN SEYDGLDDIL LCNEILDSSA LLNDSGLDYT  360
NLDDIASYAT QRARNDNEPC GISLLDTLEL DTPDFDLSSL YFCSQDSSIL DWMDRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028206545.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like
RefseqXP_028206546.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like
TrEMBLA0A445GFB60.0A0A445GFB6_GLYSO; Suppressor of gamma response 1
TrEMBLK7MFL50.0K7MFL5_SOYBN; Uncharacterized protein
STRINGGLYMA16G07501.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.12e-88NAC domain containing protein 44
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]