PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27631.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 156aa    MW: 17756.8 Da    PI: 6.6022
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27631.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.32.2e-122342456
                S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRakek 56
                ++  e++ +LA++lg++ rqV +W+qN+Ra++k
  KHN27631.1  2 KLEPEQKFHLANQLGVPPRQVAIWYQNKRARWK 34
                5778999*************************9 PP
2HD-ZIP_I/II85.57.3e-282722393
  HD-ZIP_I/II 23 kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
                 kLepe+K +la++Lg+ prqva+W+qn+RAR+kt+ lE+d+ +L+++++++++e+++Lek+ve+L++elk+
   KHN27631.1  2 KLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHGVLQARLENVVAEKKQLEKDVERLKAELKK 72
                 8*******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.71136IPR001356Homeobox domain
CDDcd000861.70E-8137No hitNo description
Gene3DG3DSA:1.10.10.602.2E-11240IPR009057Homeodomain-like
PfamPF000469.5E-10234IPR001356Homeobox domain
SuperFamilySSF466891.71E-10344IPR009057Homeodomain-like
PROSITE patternPS0002701134IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MKLEPEQKFH LANQLGVPPR QVAIWYQNKR ARWKTQSLEV DHGVLQARLE NVVAEKKQLE  60
KDVERLKAEL KKAQEMLLIS NNVKSGDHSN NNNNNASCEF STSFEEGGSS GVVLDDATHH  120
HHHECWQSGS EVMQVEELFT YFMGANYGSG LHEKRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27631.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354140.0AC235414.1 Glycine max strain Williams 82 clone GM_WBb0131H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028192515.11e-113homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A0B2R1011e-113A0A0B2R101_GLYSO; Homeobox-leucine zipper protein ATHB-52
TrEMBLA0A368UHE41e-112A0A368UHE4_SOYBN; Uncharacterized protein
TrEMBLA0A445HQW61e-112A0A445HQW6_GLYSO; Homeobox-leucine zipper protein ATHB-52
STRINGGLYMA12G18720.11e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-25homeobox protein 52
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]