PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27654.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 321aa    MW: 36721.4 Da    PI: 7.8186
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27654.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05157176120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 + C++C+ksF+r  n++ H+
  KHN27654.1 157 FACSICSKSFNRYNNMQMHM 176
                 78*****************9 PP
2zf-C2H214.30.00012241263123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C +C+ksF  k + ++H +++
  KHN27654.1 241 FMCRKCSKSFAVKGDWRTHEKNC 263
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-5143180No hitNo description
SMARTSM003550.19157179IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-4157176IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.533157184IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-6157176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
SMARTSM00355190204236IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-5227261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.17E-6227261No hitNo description
SMARTSM0035556241261IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSFRECNNVE NKNLCLQTPT FIEWLKPSSS SSLTSLISSS PPSYSLTQHE QLAQETIQFL  60
PFKEDQHIRV QKEGFEVKEE KKVEQVTVAL HIGLPNTGGH DPDDDNDHDA DDEKKVFHVK  120
EEEEPLKKGF QGNCSFNQER RFWIPTPAQI LVGPMQFACS ICSKSFNRYN NMQMHMWGHG  180
SEFRKGPDSL KGTQPAAMLR LPCYCCAQGC KNNINHPRAK PLKDFRTLQT HYKRKHGAKP  240
FMCRKCSKSF AVKGDWRTHE KNCGKLWYCT CGSDFKHKRS LKDHIRSFGK GHSPHPSLEG  300
FVEDEKECVT GSDDEDDVAH T
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27654.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539466.10.0zinc finger protein WIP3 isoform X1
RefseqXP_028193837.10.0zinc finger protein WIP3-like
SwissprotQ9SGD11e-121ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0B2R6410.0A0A0B2R641_GLYSO; Protein TRANSPARENT TESTA 1
STRINGGLYMA12G30930.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-111WIP domain protein 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]