PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27668.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 252aa    MW: 28037.6 Da    PI: 8.4636
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27668.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.7e-1776126155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr++   +rWv+e+r+p   +k+ r++lg++ t+e+Aa+a++ a ++l+g
  KHN27668.1  76 PVYRGVRQRN-GNRWVCEVREP---NKKSRIWLGTYPTPEMAARAHDVAVLALKG 126
                 68*****999.9******9998...347**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-1276126IPR001471AP2/ERF domain
PROSITE profilePS5103221.49677134IPR001471AP2/ERF domain
SMARTSM003802.8E-2677140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-2977136IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2077136IPR016177DNA-binding domain
PRINTSPR003672.2E-77889IPR001471AP2/ERF domain
CDDcd000188.12E-2778136No hitNo description
PRINTSPR003672.2E-7100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDVKMNKVES ESPYYNYSSS SSSSTSSQSQ LSLAFACNPN FSPDHSSLHA ETWKAGVLIS  60
HKRKAGRKKF RETRHPVYRG VRQRNGNRWV CEVREPNKKS RIWLGTYPTP EMAARAHDVA  120
VLALKGTSAL FNFPDSVSLL PVAKSSSAAD VRVAASKVST IFCPSYSSVT LSSSSPSNSR  180
VKTKPCLVDD FVKTENNVDE AKSVFFDEEA FYNMPLLLDS MAEGLLITPP SMKRAFDWDQ  240
VDCETDLTLW TD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00452DAPTransfer from AT4G25470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27668.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-88AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028193370.10.0dehydration-responsive element-binding protein 1B-like
SwissprotA2WZI42e-53DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z52e-53DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A0B2R6U60.0A0A0B2R6U6_GLYSO; Dehydration-responsive element-binding protein 1F
STRINGGLYMA12G30740.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.12e-47C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]