PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27679.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 302aa    MW: 32728.9 Da    PI: 4.9061
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27679.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05277299223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C+ C+ksF++ s L++H +  H
  KHN27679.1 277 SCKSCSKSFNSESGLQQHNKAkH 299
                 7*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.05276302IPR007087Zinc finger, C2H2
PROSITE patternPS000280278299IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MYVVSAEVKV GESVKVDPAE FEACIHLSQA ALGEAKKDKS NEPVVLYLKV GQQKFVLGTL  60
SREKIPQIPL ELVLEKEFEL SHNSKNASVH FCGYKAFYDA GDEYPYSEED VPLLKAENGK  120
PETKAEELKV PESKKAVAKA SASAKQVKIV EPKKDNEEDS DDDSDEDDDF GSSDEEMEDA  180
DSDSDDESDD KEDDDEETHP KNKKADLGKK RPNESASKTP VSSKKAKNAT PEKTDGKKGG  240
HTATPHPAKK GGKTPSSEAK AKTPNNEAKT PMSGGLSCKS CSKSFNSESG LQQHNKAKHG  300
GQ
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27679.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976760.0BT097676.1 Soybean clone JCVI-FLGm-22K12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242333.21e-164histone deacetylase HDT1-like
RefseqXP_028195428.11e-164histone deacetylase HDT1-like
SwissprotQ8LJS22e-89HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A0B2R6780.0A0A0B2R678_GLYSO; Histone deacetylase HDT1
STRINGGLYMA12G30600.11e-164(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.13e-24histone deacetylase 2C
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]