PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN27713.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 318aa MW: 36939 Da PI: 7.7132

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN27713.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.2	1.7e-49	27	155	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kg 97 pGfrFhPtdeelv++yL++k+++k++++ e ik++diyk++PwdLp ++++++eke yfF++r +ky+++ r+nr+t sg+Wkatg dk+v+s+ ++ KHN27713.1 27 PGFRFHPTDEELVSFYLQRKLDKKPISI-ELIKQIDIYKYDPWDLPkTSATGGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHggeGN 124 9*************************.89***********44666688899********************************965555 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +glkktLv+y+g+a kg ktdW+mhe+rl KHN27713.1 125 DCIGLKKTLVYYRGSAGKGIKTDWMMHEFRL 155 55*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-54	24	190	IPR003441	NAC domain
PROSITE profile	PS51005	52.401	25	190	IPR003441	NAC domain
Pfam	PF02365	1.6E-24	27	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MGVNEDFNKD IDYDHHEYVD DDDVPLPGFR FHPTDEELVS FYLQRKLDKK PISIELIKQI 60 DIYKYDPWDL PKTSATGGEK EGYFFCRRGR KYRNSIRPNR VTGSGFWKAT GIDKPVYSHG 120 GEGNDCIGLK KTLVYYRGSA GKGIKTDWMM HEFRLPSNTD NNNTNLRSSK NYVDVPQEAE 180 IWTLCRIFKR NVSQRKHTPD LKQISAKRQS IHDKSSRMSN VEFNTTNQES YINFGGHYHN 240 EQKPTINYTN SDQRNQYHVM THHQLCAPVA QQHQQPQQLT SPSSNFWINN PPGNDFFTFD 300 NWDELGSLVK FAVDSPSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-46	27	196	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-46	27	196	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-46	27	196	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-46	27	196	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-46	27	196	22	174	NAC domain-containing protein 19
3swm_B	3e-46	27	196	22	174	NAC domain-containing protein 19
3swm_C	3e-46	27	196	22	174	NAC domain-containing protein 19
3swm_D	3e-46	27	196	22	174	NAC domain-containing protein 19
3swp_A	3e-46	27	196	22	174	NAC domain-containing protein 19
3swp_B	3e-46	27	196	22	174	NAC domain-containing protein 19
3swp_C	3e-46	27	196	22	174	NAC domain-containing protein 19
3swp_D	3e-46	27	196	22	174	NAC domain-containing protein 19
4dul_A	3e-46	27	196	19	171	NAC domain-containing protein 19
4dul_B	3e-46	27	196	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN27713.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096898	0.0	BT096898.1 Soybean clone JCVI-FLGm-15F10 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028203626.1	0.0	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	4e-83	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A0B2R705	0.0	A0A0B2R705_GLYSO; NAC domain-containing protein 42
STRING	GLYMA15G40950.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	5e-84	NAC domain containing protein 42

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]