PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN27913.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 279aa MW: 31819 Da PI: 8.9718

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN27913.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.9	2.1e-32	48	188	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWka 85 lp+G++F+Ptd+e++ e+L++kv+++ ++l+ +++ +i+ ++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ + +W++ KHN27913.1 48 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICCTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHtdadgsETRWHK 144 799*********9.99*99984443333332222333336******.555555677**************744446555788* PP NAM 86 tgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 tgk+++v+ +g+l+g kk+Lv+y++ +++k+ekt+Wvmh+y+l KHN27913.1 145 TGKTRPVFI-SGKLKGYKKILVLYTNyrKQRKPEKTNWVMHQYHL 188 *******.999*******5444788889*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-37	43	207	IPR003441	NAC domain
PROSITE profile	PS51005	32.632	48	207	IPR003441	NAC domain
Pfam	PF02365	1.4E-15	49	188	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MTQCSYPENN HSIIVERHKD SLIRTCPTCG HHVKCQEQAA GIHDLPGLPA GVKFDPTDQE 60 ILEHLEAKVR SDIHKLHPLI DEFIPTLEGE NGICCTHPEK LPGVSKDGLI RHFFHRPSKA 120 YTTGTRKRRK VHTDADGSET RWHKTGKTRP VFISGKLKGY KKILVLYTNY RKQRKPEKTN 180 WVMHQYHLGN NEEEKEGELV VSKVFYQTQP RQCGSLMKDS YPAKLKGEGV HEVTNHKNTG 240 YVEYYNNSFV SFDQGDQHRS STAQLVSHFP VHGGATFIP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN27913.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003540381.1	0.0	NAC domain-containing protein 73
Refseq	XP_028193025.1	0.0	NAC domain-containing protein 73-like
Swissprot	O49459	1e-116	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A445HT95	0.0	A0A445HT95_GLYSO; NAC domain-containing protein 73
TrEMBL	I1LUJ2	0.0	I1LUJ2_SOYBN; Uncharacterized protein
STRING	GLYMA12G33460.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-106	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]