PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28074.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 187aa    MW: 21007.4 Da    PI: 8.6657
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28074.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.62.3e-4066142278
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 Cq+e C adl+ ak+yhrrhkvCe hskap+v+v+gl+qrfCqqCsrf el efDe+krsCrrrLa+hnerrrk++a
  KHN28074.1  66 CQAEMCGADLTVAKRYHRRHKVCELHSKAPSVMVAGLRQRFCQQCSRFQELAEFDEAKRSCRRRLARHNERRRKSNA 142
                 **************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.0E-3458127IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.34263140IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-3664144IPR004333Transcription factor, SBP-box
PfamPF031102.3E-3166139IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEIKSRERIQ VSIEKVRRDS TVEVEDEEEE DESVVGGEGG LAEDEKKKGG GGSGRRGSSG  60
VSPPSCQAEM CGADLTVAKR YHRRHKVCEL HSKAPSVMVA GLRQRFCQQC SRFQELAEFD  120
EAKRSCRRRL ARHNERRRKS NAETCNEGCS GSKGQHPTES HCRNADVWGR IQMNIAKNSG  180
YNSFHIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3454139184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28074.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0989280.0BT098928.1 Soybean clone JCVI-FLGm-16D18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540473.11e-135squamosa promoter-binding-like protein 3
RefseqXP_028194818.11e-135squamosa promoter-binding-like protein 3
SwissprotQ387411e-39SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A445HTX41e-133A0A445HTX4_GLYSO; Squamosa promoter-binding protein 1
TrEMBLI1LV251e-133I1LV25_SOYBN; Uncharacterized protein
STRINGGLYMA12G35460.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.29e-18squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]