PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28123.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 217aa    MW: 24741.4 Da    PI: 9.4972
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28123.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.77e-34151321128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lp GfrF Ptdeel+ +yLkkk+ +++l++ +vi+e+d++++ePw+Lp ++   +++ yfFs+r++      + +r + sg Wk+ gk+k+++++ +++
  KHN28123.1  15 LPIGFRFCPTDEELLLHYLKKKAFAQQLPA-SVISEFDVFQTEPWKLPGEL---RENRYFFSNRSNG-----NIKRPAGSGCWKSVGKEKQIIHSeSNQ 104
                 699***************************.99***************544...4578****99774.....5678889************99985777 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 ++g+k+tL f kg++++  +t+Wvmhe rl
  KHN28123.1 105 VIGMKETLFFCKGSHET--RTQWVMHELRL 132
                 8**********888877..9*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-408153IPR003441NAC domain
PROSITE profilePS5100539.54615153IPR003441NAC domain
PfamPF023655.3E-2116132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGRFENHVVK GGIKLPIGFR FCPTDEELLL HYLKKKAFAQ QLPASVISEF DVFQTEPWKL  60
PGELRENRYF FSNRSNGNIK RPAGSGCWKS VGKEKQIIHS ESNQVIGMKE TLFFCKGSHE  120
TRTQWVMHEL RLVASYPCQM PVADFAVYRI FQKNKMKTRR SHGKKPSSSS KLQRLVDVKA  180
SFFDFTVDFN HDDIGPPTPC SPCLSEGCSE ISSSKLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-241315415166NO APICAL MERISTEM PROTEIN
1ut4_B4e-241315415166NO APICAL MERISTEM PROTEIN
1ut7_A4e-241315415166NO APICAL MERISTEM PROTEIN
1ut7_B4e-241315415166NO APICAL MERISTEM PROTEIN
3swm_A4e-241315418169NAC domain-containing protein 19
3swm_B4e-241315418169NAC domain-containing protein 19
3swm_C4e-241315418169NAC domain-containing protein 19
3swm_D4e-241315418169NAC domain-containing protein 19
3swp_A4e-241315418169NAC domain-containing protein 19
3swp_B4e-241315418169NAC domain-containing protein 19
3swp_C4e-241315418169NAC domain-containing protein 19
3swp_D4e-241315418169NAC domain-containing protein 19
4dul_A4e-241315415166NAC domain-containing protein 19
4dul_B4e-241315415166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28123.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0972390.0BT097239.1 Soybean clone JCVI-FLGm-16C7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239882.11e-163uncharacterized protein LOC100815663
RefseqXP_028208685.11e-163NAC domain-containing protein 83-like
SwissprotQ9FY932e-42NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0B2R8491e-162A0A0B2R849_GLYSO; NAC domain-containing protein 68
TrEMBLC6THW31e-162C6THW3_SOYBN; Uncharacterized protein
STRINGGLYMA17G23740.11e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-45NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]