PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28335.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 261aa    MW: 29612.4 Da    PI: 4.8171
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28335.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS149.43.3e-466258158373
        GRAS 158 leetgerLakfAeelgvpfefnvl...vakrledleleeLrvkp...............gEalaVnlvlqlhrll......................de 216
                 +ee+g +L +fA++ +v +ef+v+   + + +++l +e+Lrv++                Eal++n++++lh+++                       +
  KHN28335.1   6 YEELGAKLVSFARSRNVIMEFRVVsssYQDGFASL-IEHLRVQQeqqqhfvyaaepstpSEALVINCHMMLHYIPdetlsdttdltsyvydssssaaVS 103
                 789********************866533344444.77777776777778888889999*********************************9999534 PP

        GRAS 217 svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                  ++++s r+ +Lk +++l P+vv++v+++ad++s++++ r+ +a+++ +  +d++++ lpr s++r+++E+    ++i+nv+a+eg +r+er e ++kW
  KHN28335.1 104 VTPTSSLRSLFLKSLRGLDPTVVILVDEDADLTSNNLVCRLRSAFNFLWIPYDTVDTFLPRGSKQRQWYEAD-TCWKIENVIAHEGLQRVERVEPKNKW 201
                 444555899***************************************************************.99************************ PP

        GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 +er+++a F+ v +se+ ++++k++l +++  g+ +++e++ +vl+Wk++++v++SaW
  KHN28335.1 202 EERMKNASFQGVGFSEDSVAEVKAMLDEHA-AGWGLKKEDEHIVLTWKGHNVVFASAW 258
                 ******************************.999************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.4791240IPR005202Transcription factor GRAS
PfamPF035141.2E-436258IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MLDLSYEELG AKLVSFARSR NVIMEFRVVS SSYQDGFASL IEHLRVQQEQ QQHFVYAAEP  60
STPSEALVIN CHMMLHYIPD ETLSDTTDLT SYVYDSSSSA AVSVTPTSSL RSLFLKSLRG  120
LDPTVVILVD EDADLTSNNL VCRLRSAFNF LWIPYDTVDT FLPRGSKQRQ WYEADTCWKI  180
ENVIAHEGLQ RVERVEPKNK WEERMKNASF QGVGFSEDSV AEVKAMLDEH AAGWGLKKED  240
EHIVLTWKGH NVVFASAWLP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B6e-157260253474Protein SHORT-ROOT
5b3h_B5e-157260199420Protein SHORT-ROOT
5b3h_E5e-157260199420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28335.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358870.0AC235887.2 Glycine max clone GM_WBc0029N01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028209782.10.0scarecrow-like protein 32
SwissprotQ9SN227e-95SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A0B2R3V30.0A0A0B2R3V3_GLYSO; Scarecrow-like protein 32
TrEMBLA0A445G7K20.0A0A445G7K2_GLYSO; Scarecrow-like protein 32
STRINGGLYMA17G17710.21e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77023347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.14e-87GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]