PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28341.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 416aa    MW: 46429.9 Da    PI: 9.5165
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28341.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP142.72.9e-441022722135
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec.eaesssssasnsss 87 
                 ++kkdrhski+T++g+RdRRvRls+ +a++fFdLqd+LGfdk+s+t+eWL++++k+aikel+++            s+ss+s+c ++ + +s+ +++++
  KHN28341.1 102 PPKKDRHSKIYTSQGLRDRRVRLSIAIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSkhsnnnsdegakSFSSSSDCdDDCEVVSEIKQKQQ 200
                 78**************************************************************99999999999988888888644444444444444 PP

         TCP  88 g............................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                 +                             aa++ +k k++qk++a    + kesr+karararert++k  + n+
  KHN28341.1 201 QlitcdaattqhnlqqgldsgdnkspttlVAARERMKLKRTQKEPA----KIKESREKARARARERTSNKIIMCNV 272
                 4666999999999999999*99876665544444445555554444....888****************9766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-44104267IPR005333Transcription factor, TCP
PROSITE profilePS5136935.495104162IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.607249266IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MFPYSSNPYP SFPSSSSSSY PPFPFLNLEN ASASNTLLHD PLSVPYIPTH HHNPSSIQEA  60
LNNLPVTDHN CGGGGGSAMT KPDSNGGGAP HYGISCFLTK KPPKKDRHSK IYTSQGLRDR  120
RVRLSIAIAR KFFDLQDMLG FDKASNTLEW LFNKSKRAIK ELARSKHSNN NSDEGAKSFS  180
SSSDCDDDCE VVSEIKQKQQ QLITCDAATT QHNLQQGLDS GDNKSPTTLV AARERMKLKR  240
TQKEPAKIKE SREKARARAR ERTSNKIIMC NVNTNNNNTG RRVQQQDLKK KCPAIENNHS  300
QIMHQSSSSP THNLVGNETP RDDFNVIEES IVIKRKLKPS LMSSSHHHHH HHQSLMIPKE  360
PPSFNNCEYH PFSNLSPNWD ANGSTGRSNF CAVASMNLST GLQIFGKSWE ECINPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28341.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555097.10.0transcription factor CYCLOIDEA
RefseqXP_028217879.10.0transcription factor CYCLOIDEA-like
TrEMBLA0A0B2R2P40.0A0A0B2R2P4_GLYSO; Transcription factor TB1 isoform A
TrEMBLK7MWI60.0K7MWI6_SOYBN; Uncharacterized protein
STRINGGLYMA19G05921.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-29TCP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]