PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28490.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 92aa    MW: 10309.1 Da    PI: 10.2792
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28490.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.47.9e-293484151
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                kprl+Wtp+LHerF+eav++LGG +kAtPk +l+lm+++ Ltl+h+kSHLQ
  KHN28490.1 34 KPRLKWTPDLHERFIEAVNELGGVDKATPKIVLKLMGIPRLTLYHLKSHLQ 84
                79************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.2423191IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-263284IPR009057Homeodomain-like
SuperFamilySSF466892.33E-133386IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-213486IPR006447Myb domain, plants
PfamPF002491.8E-83685IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MHALRMHSPT ERHMMMQGGN GSGDSGLVLS TDAKPRLKWT PDLHERFIEA VNELGGVDKA  60
TPKIVLKLMG IPRLTLYHLK SHLQVTLFQL PI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-193484252Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-193484252Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-193484151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-193484151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-193484151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-193484151Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-193484252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-193484252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-193484252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-193484252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-193484252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-193484252Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28490.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150447e-66AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020205825.16e-54myb-related protein 2
RefseqXP_028198916.12e-51myb-related protein 2-like isoform X1
SwissprotQ9SQQ99e-38PHL9_ARATH; Myb-related protein 2
TrEMBLA0A0B2R4996e-61A0A0B2R499_GLYSO; Myb family transcription factor APL
STRINGGLYMA19G05385.11e-60(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.13e-40G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]