PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28557.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CO-like
Protein Properties Length: 334aa    MW: 37740.2 Da    PI: 6.9198
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28557.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.23e-07333535
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                 C+ +++k++ lfC+ ++  lC  C ++ H 
  KHN28557.1  3 PCDYCDSKPALLFCRADSAKLCLVCDQHVHA 33
                7**************************9995 PP
2CCT652.2e-22287330144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R  a+lRYkeK+ktR+++K+irYesRKa+A++R+Rv+GrFvk++
  KHN28557.1 287 RGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVRGRFVKAS 330
                 6789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.954146IPR000315B-box-type zinc finger
SMARTSM003364.3E-10146IPR000315B-box-type zinc finger
CDDcd000213.87E-9346No hitNo description
PfamPF006434.4E-5333IPR000315B-box-type zinc finger
PfamPF062034.3E-16287329IPR010402CCT domain
PROSITE profilePS5101714.842287329IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MLPCDYCDSK PALLFCRADS AKLCLVCDQH VHAANALSLK HVRFQICDSC KSDTAVLRCS  60
TDNLEPVVPT AASRDEVYEQ VLEIARQRNN GLGAEQLKLD DSPGNDVVVV VDEMLIQQTP  120
FTSLLMLQNS ESEFDARKSN DNNGYGTEAW DLHWNYNNPA YQPPQVWDFQ LQKSTDCNEP  180
RVVTFDGLEV PKLFQDVHNM NYSTIGDDID ILSRNNQSDQ SSSSHAKRKE ESNKKARGGL  240
SSESTLFESI PYSGTNNVVV MEHLVGGNEN VSTLKARVSL QELAKNRGDA MLRYKEKKKT  300
RRYDKHIRYE SRKARADTRK RVRGRFVKAS DVQA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28557.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0688980.0HM068898.1 Glycine max CONSTANS-like zinc finger protein (COL17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028216858.10.0zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A445FEJ10.0A0A445FEJ1_GLYSO; Zinc finger protein CONSTANS-LIKE 14 isoform A
STRINGGLYMA19G27240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.13e-27B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]