PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28676.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 246aa    MW: 27934.5 Da    PI: 6.3916
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28676.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002178100123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C k F ++  L  H++ H
  KHN28676.1  78 FECQYCYKEFANSQALGGHQNAH 100
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-574104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.32E-674105No hitNo description
PfamPF139127.0E-678102IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.5178105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEKDIIDLSP TWDCDNGNST EKRLRLFGFE LNPSSKEGCA KESGEGDESV NSSNSASSGG  60
DKTVQEKTSA KDPDERKFEC QYCYKEFANS QALGGHQNAH KKERMKKKRL QLQSINRYLQ  120
HPFQSNHGFA YPSDTPWFYD PSTYNNNSEF TLCEEPQISF NSNSVLDSNF SNDQKTSWYS  180
LASHPSNIQQ DTCMFTFSSN ASNNNNSPFI FKPCHFPASN QNHNKTLDLQ LGLNLESNTR  240
SSLRRM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28676.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0918140.0BT091814.1 Soybean clone JCVI-FLGm-8L2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028194305.10.0zinc finger protein 5-like
TrEMBLA0A0B2R3F70.0A0A0B2R3F7_GLYSO; Zinc finger protein 6
STRINGGLYMA02G03380.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.11e-15C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]