PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28698.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 202aa    MW: 22068.7 Da    PI: 7.5593
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28698.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.5e-1185132455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  KHN28698.1  85 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 132
                 8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-1879149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-1079136No hitNo description
Gene3DG3DSA:4.10.280.102.0E-1881150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.82881131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-885132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1087137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MLNIAHKKPR HAAGEEEESA KGASTTNAVD EGCGDGKRVK TSESGKGEGE SCSGKPAKQS  60
GKPPSEPPKQ DYIHVGARRG QATDSHSLAE RARREKISER MKILQDLVPG CNKVIGKALV  120
LDEIINYIQS LQRQVEFLSM KLEAVNSRIA PGIEVFPPKD FDQQTFDTTG MPFASQATRD  180
YSRGSSPEWL HMQVGDGFER AT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28698.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1466841e-114BT146684.1 Medicago truncatula clone JCVI-FLMt-9L20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519223.11e-136transcription factor BHLH089
RefseqXP_028193956.11e-136transcription factor BHLH089-like
SwissprotQ69WS31e-74BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A0B2R9Q81e-148A0A0B2R9Q8_GLYSO; Transcription factor BPE
STRINGGLYMA02G02934.11e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-80BIG PETAL P
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]