PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN28868.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 286aa MW: 32197.1 Da PI: 7.4057

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN28868.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.1	6.1e-31	2	55	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rF++av++LGG+e+AtPk +l+lm++k+L+++hvkSHLQ++R+ KHN28868.1 2 PRLRWTPDLHLRFIHAVQRLGGQERATPKLVLQLMNIKSLSIAHVKSHLQMFRS 55 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.535	1	58	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.4E-27	1	56	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.78E-14	2	56	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-22	2	57	IPR006447	Myb domain, plants
Pfam	PF00249	2.3E-8	3	53	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MPRLRWTPDL HLRFIHAVQR LGGQERATPK LVLQLMNIKS LSIAHVKSHL QMFRSKKVDD 60 RNQVFADHNS LVETGDKNIY NLSQLSMLQG YNPSQSSSFS YTNNYPSYGF GDASFGVYEK 120 LLQRPFDWSN AISSREGSSI FGEQSKIREP KDEFLSFGAH DHSLSTPTRL SHVDHTPPIN 180 IMQQIAQNLM PINPTTNQPE LKTLKRKASD HTTLDLDLSL KLNSKINDAE EGTLNNHEVD 240 STNLSLSLCS QLSSSSNPSS RLIKEAQQDR CDEQGKIMAS TLDLTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN28868.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520352.1	0.0	two-component response regulator ARR18
Refseq	XP_028224470.1	0.0	two-component response regulator ARR18-like
TrEMBL	A0A445L7J2	0.0	A0A445L7J2_GLYSO; Putative Myb family transcription factor
TrEMBL	K7KCY9	0.0	K7KCY9_SOYBN; Uncharacterized protein
STRING	GLYMA03G06620.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-45	G2-like family protein