PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28904.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 710aa    MW: 79535.5 Da    PI: 5.4819
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28904.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.4e-07120142427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 ++C ff++ G C  GdrC F Hgp
  KHN28904.1 120 VPCYFFQK-GLCLKGDRCAFLHGP 142
                 69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.6062554IPR000571Zinc finger, CCCH-type
SMARTSM003560.0022653IPR000571Zinc finger, CCCH-type
PfamPF156635.7E-122680No hitNo description
PROSITE profilePS5010312.4555682IPR000571Zinc finger, CCCH-type
SMARTSM003560.00135881IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6116142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.394116143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6117141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4121142IPR000571Zinc finger, CCCH-type
PfamPF146080.57121141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MVTQQQPQPQ LQVQPTPPSS QDEALKRNTD CVYFLASPLT CKKGNECEYR HSEYARVNPR  60
DCRYWLSGNC LNPKCPFRHP PLDGLLGTQA AVTGGPSVPP SQIPTASAAH APYNSSKQAV  120
PCYFFQKGLC LKGDRCAFLH GPPAPTPSTG NKVAAQVPVT IQGAENPSFK KPFVSNEKYT  180
QERKTSQGNF AKSGGAPEAK PSPKIETAPQ RNMFELEKKV PPPSAEFNNE ASRFKTISPP  240
VTNGPIVARS NRLHQARVPD DHNFQSGKDS DEFLRESSPG FDVLVADELR NSDYYHGEDE  300
FGKARGQDER NLDSLNEYDL GHSGDYSLAA DIDRERFRGP QGYESYDHMQ EPYAWEQHRK  360
PSSHLGRRTR RRSDSPENAE VSDLRHHLSK RRKGNGLKSV ISHDHAHGGH GEEQSRRSFS  420
RKDSLELPLN ESSLGNRFRG RIKLPENGDG DHPEREDGGR FRNRLPSGRL PATHHLSPRE  480
GRVHDRIRGR LQDDERRNSK DRLMGRELPG DRSDFAAPKS LSELKNGRNT ENREQQSLGR  540
RRSLRDDHPQ SDDDFLFEGP KPLSEILKEK RGAGADSDSG NGKSSDNKNV EVTHGSDPMS  600
VANTQNGVLS ETKEDDKNLL LNNEESKLEV TDAAGGDNDG EYEEGIVYNE SGEDQYYEGD  660
DQRDADYGYE QGEEGYYEYE QGEEGENQEE DYMEEEDGDD FAKKIGVVHS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28904.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028243286.10.0zinc finger CCCH domain-containing protein 17-like
TrEMBLA0A0B2R9T30.0A0A0B2R9T3_GLYSO; Zinc finger CCCH domain-containing protein 17
STRINGGLYMA08G09630.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]