PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28973.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 212aa    MW: 24434.9 Da    PI: 8.6024
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28973.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.24.9e-141562148
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                k+ie+k   q t++kR+ gi KKA+EL + C+a+v +++f s+gk   
  KHN28973.1 15 KKIEDKKDLQKTLAKRKCGIYKKASELTTICGAKVDMLMFTSSGKWLS 62
                68******************************************9655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.7E-16766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.525767IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-17872IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-12929IPR002100Transcription factor, MADS-box
PfamPF003195.7E-151663IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-122944IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-124465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEGGNTKRKQ KREIKKIEDK KDLQKTLAKR KCGIYKKASE LTTICGAKVD MLMFTSSGKW  60
LSYGEPSHQA NIRSSDEEND PTKDDINEPV EDHAKSKIDE LCEKNKALIH QLHYEEEREN  120
KLVEIMKTRN THGWWEAKIQ DLNCEQAKEL EASFVELKKK LENELSVKQG DNGKSSHGNE  180
KLRILVKMAM VLFFASLLNQ HPKANSFIYI QS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28973.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006586356.11e-155agamous-like MADS-box protein AGL62
TrEMBLA0A0B2RAI71e-154A0A0B2RAI7_GLYSO; Agamous-like MADS-box protein AGL62
STRINGGLYMA08G08870.11e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1822966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28450.11e-17AGAMOUS-like 58
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]