PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29077.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 249aa    MW: 28111 Da    PI: 4.377
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29077.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.62.3e-211363256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  KHN29077.1 13 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDNAAFKLRGE 63
                59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.07E-351272No hitNo description
SMARTSM003801.5E-391376IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-241371IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-321371IPR001471AP2/ERF domain
PROSITE profilePS5103223.2351370IPR001471AP2/ERF domain
PRINTSPR003671.9E-111425IPR001471AP2/ERF domain
PfamPF008476.8E-151463IPR001471AP2/ERF domain
PRINTSPR003671.9E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MKHAGTAAKP TKLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFDTAEEAA LAYDNAAFKL  60
RGEFARLNFP HLRHHGAFVF GEFGDYKPLP SSVDSKLQAI CESLAKQEEK PCCSVEDVKP  120
VIHAAELAEV ESDVAKSNAE YVYPEFEDFK VEHENPMFSG ESSSPESTEV ESDVAKSNAE  180
YVYPEFEDFK VENENPMLSS SVSGESSSPE SGVTFLDFSD FSDSNNQWDE MENFGLEKFP  240
SVEIDWEAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-221270160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29077.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2966510.0AY296651.1 Glycine max DREB2 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001345278.11e-135ethylene-responsive transcription factor
RefseqXP_028243789.11e-135ethylene-responsive transcription factor ERF060-like
TrEMBLA0A445JEC51e-134A0A445JEC5_GLYSO; Ethylene-responsive transcription factor ERF060
TrEMBLQ4QYE11e-134Q4QYE1_SOYBN; DREB2
STRINGGLYMA08G14600.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.16e-49related to AP2 4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]